Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HEP75_RS05385 Genome accession   NZ_CP051261
Coordinates   1264934..1266193 (-) Length   419 a.a.
NCBI ID   WP_185825702.1    Uniprot ID   -
Organism   Xanthomonas sp. SI     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1259934..1271193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HEP75_RS22260 (HEP75_01051) - 1260699..1261157 (+) 459 WP_255424006.1 hypothetical protein -
  HEP75_RS05365 (HEP75_01052) - 1261172..1261849 (+) 678 WP_046978044.1 response regulator transcription factor -
  HEP75_RS05370 (HEP75_01053) - 1261842..1263182 (+) 1341 WP_185825700.1 HAMP domain-containing sensor histidine kinase -
  HEP75_RS05375 (HEP75_01054) coaE 1263430..1264050 (-) 621 WP_185825701.1 dephospho-CoA kinase -
  HEP75_RS05380 (HEP75_01055) - 1264064..1264927 (-) 864 WP_046978035.1 A24 family peptidase -
  HEP75_RS05385 (HEP75_01056) pilC 1264934..1266193 (-) 1260 WP_185825702.1 type II secretion system F family protein Machinery gene
  HEP75_RS05390 (HEP75_01057) pilA/pilAI 1266576..1266980 (+) 405 WP_185825703.1 pilin Machinery gene
  HEP75_RS22395 - 1267063..1267485 (+) 423 WP_185825704.1 pilin -
  HEP75_RS05400 (HEP75_01058) - 1267529..1269433 (+) 1905 WP_185825705.1 hypothetical protein -
  HEP75_RS05405 (HEP75_01059) - 1269524..1270684 (+) 1161 WP_185825706.1 DegT/DnrJ/EryC1/StrS family aminotransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45767.05 Da        Isoelectric Point: 10.1183

>NTDB_id=437129 HEP75_RS05385 WP_185825702.1 1264934..1266193(-) (pilC) [Xanthomonas sp. SI]
MSATRSAVPKEPVARNTSQQLPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPSVVKPKPKPLFGSAGSKISAKD
IAFFSRQMATMMKSGVPIVGSLEIIGSGHKNPRMKKMVDQVRTDIEGGSSLYEAISKHPIQFDELYRNLVKAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVMAVALLVSSILLVWVVPQFEDVFKGFGAELPAFTQMIVAASRFMVAYWWM
LLLVLIGTIVGFIFAYKRSPSMQHGMDRLILKVPIIGQIMHNSSVARFSRTLGVTFRAGVPLVEALDIVAGATGNSVYEK
AVLRMRDDVSVGYPVNVAMKQTNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=437129 HEP75_RS05385 WP_185825702.1 1264934..1266193(-) (pilC) [Xanthomonas sp. SI]
ATGTCCGCAACTCGTAGCGCAGTACCCAAAGAGCCCGTCGCACGCAATACCAGCCAGCAGTTGCCGTTCGTCTGGGAAGG
GACGGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGACCGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCACGCCCTCGGTGGTCAAGCCCAAGCCCAAGCCGCTGTTCGGCTCAGCCGGCAGCAAGATCAGCGCAAAGGAC
ATCGCCTTTTTCAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTTCCCATCGTGGGGTCGCTGGAAATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTGGATCAGGTCCGCACCGACATCGAGGGTGGCTCGTCGCTCTATGAAG
CGATCAGCAAGCACCCGATCCAGTTCGACGAGCTTTACCGCAATCTGGTCAAGGCCGGCGAAGGCGCCGGCGTGCTGGAG
ACCGTGCTGGAGACGGTGGCGACCTATAAGGAAAACATCGAAGCGCTGAAGGGCAAGATCAAGAAGGCGCTGTTCTATCC
GGCCATGGTCATGGCGGTGGCGCTGCTTGTGAGTTCGATCCTGCTAGTCTGGGTAGTGCCGCAGTTCGAGGACGTTTTCA
AGGGCTTTGGCGCAGAGTTGCCCGCGTTTACCCAAATGATCGTGGCCGCGTCGCGCTTCATGGTCGCCTATTGGTGGATG
CTGTTGCTCGTGCTGATAGGCACTATCGTCGGCTTCATCTTCGCCTACAAGCGCTCGCCGTCGATGCAGCACGGCATGGA
CCGGCTGATCCTGAAAGTGCCGATCATCGGCCAGATCATGCATAACAGCTCCGTAGCGCGCTTCTCGCGGACTCTGGGCG
TGACCTTCCGCGCCGGCGTTCCGTTGGTGGAGGCCTTGGACATCGTCGCCGGCGCCACCGGCAACAGCGTCTACGAGAAA
GCGGTGTTGCGCATGCGAGACGACGTCTCGGTAGGCTACCCGGTCAACGTAGCGATGAAGCAAACCAACCTGTTTCCGCA
CATGGTCATCCAGATGACCGCGATCGGCGAAGAGGCCGGTGCGCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTTCG
AGCAGGAAGTGAACAATGCGGTGGATGCGTTGAGCAGCCTGATCGAGCCGCTGATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTGATCGGCATGTATCTGCCCATCTTCAAGCTGGCCTCCGTCGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Legionella pneumophila strain ERS1305867

51.733

96.42

0.499
  pilC Acinetobacter baylyi ADP1

50.98

97.375

0.496
  pilC Acinetobacter baumannii D1279779

50.49

97.375

0.492
  pilG Neisseria gonorrhoeae MS11

42.965

94.988

0.408
  pilC Vibrio cholerae strain A1552

42.222

96.659

0.408
  pilG Neisseria meningitidis 44/76-A

42.356

95.227

0.403
  pilC Vibrio campbellii strain DS40M4

40.05

94.749

0.379
  pilC Thermus thermophilus HB27

39.25

95.465

0.375