Detailed information NTG0437129

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: IMY14_RS14140
• Genome accession: NZ_CP063150
• Coordinates: 2693594..2694721 (-)
• Length: 375 a.a.
• NCBI ID: WP_014477416.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain s-16
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2688594..2699721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMY14_RS14115	-	2688788..2689306 (-)	519	WP_047182913.1	GNAT family N-acetyltransferase	-
IMY14_RS14120	-	2689325..2689780 (-)	456	WP_047182914.1	MarR family winged helix-turn-helix transcriptional regulator	-
IMY14_RS14125	-	2689896..2690543 (+)	648	WP_047182915.1	YitT family protein	-
IMY14_RS14130	-	2690649..2691449 (-)	801	WP_047182916.1	dihydrodipicolinate synthase family protein	-
IMY14_RS14135	-	2691598..2692977 (+)	1380	WP_047182917.1	PLP-dependent aminotransferase family protein	-
IMY14_RS14140	rapC	2693594..2694721 (-)	1128	WP_014477416.1	Rap family tetratricopeptide repeat protein	Regulator
IMY14_RS14145	-	2694907..2695056 (+)	150	WP_158336011.1	hypothetical protein	-
IMY14_RS22000	-	2695089..2695232 (+)	144	WP_253206425.1	EndoU domain-containing protein	-
IMY14_RS14155	-	2695308..2695611 (+)	304	Protein_2774	tRNA-Val4	-
IMY14_RS14160	-	2695705..2696139 (+)	435	WP_047182918.1	SMI1/KNR4 family protein	-
IMY14_RS14165	-	2696385..2697107 (-)	723	WP_015384163.1	NPP1 family protein	-
IMY14_RS14170	bltR	2697693..2698514 (-)	822	WP_047182919.1	multidrug efflux transcriptional regulator BltR	-

Sequence

Protein

• Length: 375 a.a.
• Molecular weight: 44164.33 Da
• Isoelectric Point: 5.6714

>NTDB_id=437129 IMY14_RS14140 WP_014477416.1 2693594..2694721(-) (rapC) [Bacillus subtilis strain s-16]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALELSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQQGVNQTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide

• Length: 1128 bp

>NTDB_id=437129 IMY14_RS14140 WP_014477416.1 2693594..2694721(-) (rapC) [Bacillus subtilis strain s-16]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTCGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACAACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGCCTGTTATCGTATTATTCTCTATTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCAGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAGAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAAAGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATCAAACAATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_8) (259-287)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (195-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	44.415	100	0.445
rapF	Bacillus subtilis subsp. subtilis str. 168	39.683	100	0.4