Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | CLO1100_RS04060 | Genome accession | NC_016791 |
| Coordinates | 933880..934935 (+) | Length | 351 a.a. |
| NCBI ID | WP_014312480.1 | Uniprot ID | H2JCX8 |
| Organism | Clostridium sp. BNL1100 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 928880..939935
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLO1100_RS04055 (Clo1100_0836) | - | 932127..933821 (+) | 1695 | WP_014312479.1 | GspE/PulE family protein | - |
| CLO1100_RS04060 (Clo1100_0837) | pilT | 933880..934935 (+) | 1056 | WP_014312480.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| CLO1100_RS04065 (Clo1100_0838) | - | 935063..936280 (+) | 1218 | WP_014312481.1 | type II secretion system F family protein | - |
| CLO1100_RS04070 (Clo1100_0839) | - | 936319..936702 (+) | 384 | WP_014312482.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| CLO1100_RS04075 (Clo1100_0840) | - | 936708..937505 (+) | 798 | WP_014312483.1 | A24 family peptidase | - |
| CLO1100_RS04080 (Clo1100_0841) | pilM | 937537..938592 (+) | 1056 | WP_014312484.1 | type IV pilus assembly protein PilM | - |
| CLO1100_RS04085 (Clo1100_0842) | - | 938632..939174 (+) | 543 | WP_014312485.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 351 a.a. Molecular weight: 38838.97 Da Isoelectric Point: 7.8270
>NTDB_id=43481 CLO1100_RS04060 WP_014312480.1 933880..934935(+) (pilT) [Clostridium sp. BNL1100]
MLSLEDLLKKTLEFGASDLHLTVGIPPTIRKNGRLSTIGEEKLMPSDTEAFVRSMLNEEQWRKYQGTGELDLSFSLKGMG
RFRVNVYKQRGTCCAAIRMVNLVIPSVEELGLPNIVTDMSKKTKGMILVTGPTGSGKSTTLALIIDLINKNRDCHILTLE
DPIEYLHKHNKSIVNQREIGNDSQSYSAALRAALREDPDVILVGEMRDTETIAIAVTAAETGHLVLSTLHTIGAANTIDR
IIDVFPPYQQQQIKVQLSTVIQSVISQQLLPRKDKPGRVPAIEIMVATPAVRNLIREGKTYQINSQIQTGAKFGMQAMDL
SLASLYKKGIISQEDAMTYAMDPDNIIRYMG
MLSLEDLLKKTLEFGASDLHLTVGIPPTIRKNGRLSTIGEEKLMPSDTEAFVRSMLNEEQWRKYQGTGELDLSFSLKGMG
RFRVNVYKQRGTCCAAIRMVNLVIPSVEELGLPNIVTDMSKKTKGMILVTGPTGSGKSTTLALIIDLINKNRDCHILTLE
DPIEYLHKHNKSIVNQREIGNDSQSYSAALRAALREDPDVILVGEMRDTETIAIAVTAAETGHLVLSTLHTIGAANTIDR
IIDVFPPYQQQQIKVQLSTVIQSVISQQLLPRKDKPGRVPAIEIMVATPAVRNLIREGKTYQINSQIQTGAKFGMQAMDL
SLASLYKKGIISQEDAMTYAMDPDNIIRYMG
Nucleotide
Download Length: 1056 bp
>NTDB_id=43481 CLO1100_RS04060 WP_014312480.1 933880..934935(+) (pilT) [Clostridium sp. BNL1100]
ATGCTTTCATTAGAGGATTTGCTAAAAAAAACTTTGGAATTTGGTGCTTCTGATTTACATTTAACAGTAGGGATTCCTCC
AACTATCAGAAAAAACGGCAGACTTTCTACCATAGGTGAAGAAAAACTCATGCCTTCTGATACTGAAGCTTTTGTCAGAA
GTATGCTCAATGAAGAACAGTGGAGAAAATATCAGGGGACCGGTGAACTTGATCTTTCATTTTCACTAAAAGGTATGGGA
AGATTCAGAGTCAATGTCTACAAGCAAAGAGGCACCTGCTGTGCTGCTATCAGAATGGTAAACCTTGTTATTCCATCTGT
TGAGGAACTTGGACTACCTAATATCGTTACGGACATGAGCAAGAAAACTAAGGGAATGATTTTAGTTACCGGCCCTACCG
GAAGCGGAAAATCAACTACTTTGGCTTTAATTATTGATTTGATAAATAAAAACAGGGATTGCCATATACTTACATTGGAA
GATCCAATTGAGTATCTTCACAAACACAATAAATCCATTGTAAATCAGAGGGAAATAGGAAATGATTCGCAATCCTATTC
TGCTGCACTTAGAGCGGCTTTAAGAGAAGACCCCGATGTAATTCTGGTAGGAGAGATGCGAGATACCGAAACTATAGCCA
TAGCTGTTACTGCGGCGGAAACTGGACACTTGGTTTTGTCTACATTACATACTATCGGAGCTGCTAATACAATTGACAGA
ATAATAGATGTTTTCCCTCCATATCAGCAGCAGCAGATAAAAGTTCAGCTTTCAACGGTTATTCAGTCAGTTATTTCGCA
GCAGCTTCTTCCAAGAAAAGATAAGCCAGGGAGAGTACCGGCTATTGAAATTATGGTAGCTACTCCTGCGGTAAGGAATT
TAATCCGTGAGGGTAAAACATATCAGATTAATTCCCAGATTCAGACCGGTGCAAAATTCGGAATGCAAGCAATGGACTTG
AGCCTGGCAAGCTTGTATAAAAAAGGTATCATAAGTCAGGAAGATGCAATGACTTATGCCATGGATCCAGACAATATTAT
CAGATACATGGGGTAA
ATGCTTTCATTAGAGGATTTGCTAAAAAAAACTTTGGAATTTGGTGCTTCTGATTTACATTTAACAGTAGGGATTCCTCC
AACTATCAGAAAAAACGGCAGACTTTCTACCATAGGTGAAGAAAAACTCATGCCTTCTGATACTGAAGCTTTTGTCAGAA
GTATGCTCAATGAAGAACAGTGGAGAAAATATCAGGGGACCGGTGAACTTGATCTTTCATTTTCACTAAAAGGTATGGGA
AGATTCAGAGTCAATGTCTACAAGCAAAGAGGCACCTGCTGTGCTGCTATCAGAATGGTAAACCTTGTTATTCCATCTGT
TGAGGAACTTGGACTACCTAATATCGTTACGGACATGAGCAAGAAAACTAAGGGAATGATTTTAGTTACCGGCCCTACCG
GAAGCGGAAAATCAACTACTTTGGCTTTAATTATTGATTTGATAAATAAAAACAGGGATTGCCATATACTTACATTGGAA
GATCCAATTGAGTATCTTCACAAACACAATAAATCCATTGTAAATCAGAGGGAAATAGGAAATGATTCGCAATCCTATTC
TGCTGCACTTAGAGCGGCTTTAAGAGAAGACCCCGATGTAATTCTGGTAGGAGAGATGCGAGATACCGAAACTATAGCCA
TAGCTGTTACTGCGGCGGAAACTGGACACTTGGTTTTGTCTACATTACATACTATCGGAGCTGCTAATACAATTGACAGA
ATAATAGATGTTTTCCCTCCATATCAGCAGCAGCAGATAAAAGTTCAGCTTTCAACGGTTATTCAGTCAGTTATTTCGCA
GCAGCTTCTTCCAAGAAAAGATAAGCCAGGGAGAGTACCGGCTATTGAAATTATGGTAGCTACTCCTGCGGTAAGGAATT
TAATCCGTGAGGGTAAAACATATCAGATTAATTCCCAGATTCAGACCGGTGCAAAATTCGGAATGCAAGCAATGGACTTG
AGCCTGGCAAGCTTGTATAAAAAAGGTATCATAAGTCAGGAAGATGCAATGACTTATGCCATGGATCCAGACAATATTAT
CAGATACATGGGGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.873 |
98.86 |
0.513 |
| pilT | Acinetobacter baylyi ADP1 |
49.565 |
98.291 |
0.487 |
| pilT | Acinetobacter baumannii D1279779 |
49.133 |
98.575 |
0.484 |
| pilT | Acinetobacter baumannii strain A118 |
49.133 |
98.575 |
0.484 |
| pilT | Acinetobacter nosocomialis M2 |
49.133 |
98.575 |
0.484 |
| pilT | Neisseria meningitidis 8013 |
49.275 |
98.291 |
0.484 |
| pilT | Neisseria gonorrhoeae MS11 |
48.986 |
98.291 |
0.481 |
| pilT | Legionella pneumophila strain Lp02 |
48.974 |
97.151 |
0.476 |
| pilT | Legionella pneumophila strain ERS1305867 |
48.974 |
97.151 |
0.476 |
| pilT | Pseudomonas aeruginosa PAK |
48.406 |
98.291 |
0.476 |
| pilT | Pseudomonas stutzeri DSM 10701 |
47.246 |
98.291 |
0.464 |
| pilT | Vibrio cholerae strain A1552 |
48.071 |
96.011 |
0.462 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.071 |
96.011 |
0.462 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.828 |
99.43 |
0.396 |
| pilU | Vibrio cholerae strain A1552 |
38.682 |
99.43 |
0.385 |
| pilU | Acinetobacter baylyi ADP1 |
37.572 |
98.575 |
0.37 |