Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HCN55_RS13265 Genome accession   NZ_CP050532
Coordinates   2545955..2546290 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis str. SMY     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2540955..2551290
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCN55_RS13245 (HCN55_13250) gcvT 2541547..2542635 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  HCN55_RS13250 (HCN55_13255) hepAA 2543077..2544750 (+) 1674 WP_004398544.1 SNF2-related protein -
  HCN55_RS13255 (HCN55_13260) yqhG 2544771..2545565 (+) 795 WP_003230200.1 YqhG family protein -
  HCN55_RS13260 (HCN55_13265) sinI 2545748..2545921 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  HCN55_RS13265 (HCN55_13270) sinR 2545955..2546290 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  HCN55_RS13270 (HCN55_13275) tasA 2546383..2547168 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  HCN55_RS13275 (HCN55_13280) sipW 2547232..2547804 (-) 573 WP_003246088.1 signal peptidase I SipW -
  HCN55_RS13280 (HCN55_13285) tapA 2547788..2548549 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  HCN55_RS13285 (HCN55_13290) yqzG 2548821..2549147 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  HCN55_RS13290 (HCN55_13295) spoIITA 2549189..2549368 (-) 180 WP_003230176.1 YqzE family protein -
  HCN55_RS13295 (HCN55_13300) comGG 2549439..2549813 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  HCN55_RS13300 (HCN55_13305) comGF 2549814..2550197 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  HCN55_RS13305 (HCN55_13310) comGE 2550223..2550570 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  HCN55_RS13310 (HCN55_13315) comGD 2550554..2550985 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  HCN55_RS13315 (HCN55_13320) comGC 2550975..2551271 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=433745 HCN55_RS13265 WP_003226345.1 2545955..2546290(+) (sinR) [Bacillus subtilis subsp. subtilis str. SMY]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=433745 HCN55_RS13265 WP_003226345.1 2545955..2546290(+) (sinR) [Bacillus subtilis subsp. subtilis str. SMY]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1