Detailed information
Bioinformatically predicted
Overview
| Name | rarA | Type | Machinery gene |
| Locus tag | HPSH417_RS02060 | Genome accession | NC_017739 |
| Coordinates | 414066..415241 (-) | Length | 391 a.a. |
| NCBI ID | WP_000060218.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Shi417 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 409066..420241
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH417_RS02025 (HPSH417_02070) | - | 409365..409679 (+) | 315 | WP_000868000.1 | hypothetical protein | - |
| HPSH417_RS02030 (HPSH417_02075) | - | 409657..410433 (+) | 777 | WP_000602378.1 | RNA polymerase sigma factor FliA | - |
| HPSH417_RS02035 (HPSH417_02080) | fliM | 410426..411490 (+) | 1065 | WP_000763580.1 | flagellar motor switch protein FliM | - |
| HPSH417_RS02040 (HPSH417_02085) | fliY | 411494..412375 (+) | 882 | WP_001150963.1 | flagellar motor switch protein FliY | - |
| HPSH417_RS02045 (HPSH417_02090) | - | 412404..412940 (+) | 537 | WP_000964052.1 | YhcH/YjgK/YiaL family protein | - |
| HPSH417_RS02050 (HPSH417_02095) | - | 412937..413434 (+) | 498 | WP_000780266.1 | DUF2147 domain-containing protein | - |
| HPSH417_RS02055 (HPSH417_02100) | fur | 413454..413906 (-) | 453 | WP_000824987.1 | ferric iron uptake transcriptional regulator | - |
| HPSH417_RS02060 (HPSH417_02105) | rarA | 414066..415241 (-) | 1176 | WP_000060218.1 | replication-associated recombination protein A | Machinery gene |
| HPSH417_RS02065 (HPSH417_02110) | - | 415238..415609 (-) | 372 | WP_000333000.1 | heat shock protein transcriptional repressor HspR | - |
| HPSH417_RS02070 (HPSH417_02115) | - | 415619..416485 (-) | 867 | WP_000045773.1 | DnaJ family protein | - |
| HPSH417_RS02075 (HPSH417_02120) | - | 416653..417903 (+) | 1251 | WP_001199606.1 | hypothetical protein | - |
| HPSH417_RS02080 (HPSH417_02125) | - | 417966..418832 (-) | 867 | WP_079991980.1 | 5'-3' exonuclease | - |
| HPSH417_RS02090 (HPSH417_02130) | - | 419068..419964 (-) | 897 | WP_000697556.1 | OriC activity response regulator | - |
Sequence
Protein
Download Length: 391 a.a. Molecular weight: 43741.41 Da Isoelectric Point: 7.7629
>NTDB_id=42398 HPSH417_RS02060 WP_000060218.1 414066..415241(-) (rarA) [Helicobacter pylori Shi417]
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIELGAKAYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
MSLTSLLNPKSLEDFLGQEHLIGKDAPLFKALQSKHFPHAFFYGPPGVGKTSLAQIIARMLERPILLFNATDFKLEDLRL
KLKNYQNTLLKPVVFIDETHRLNKTQQEFLLPIMEKDHALILGASTQDPNYSLSHAIRSRSFIFELTPLNKSDLDKLCAK
ALTLLKKQIELGAKAYLLNNSAGDARALLNLLDLSAKIEDPITLETLQSLRPHSLNDGSYSDDTHYNLTSALIKSLRGSD
ENASIYYLARLIAGGENPEFIARRLVIFASEDIGNANPNALNLAASCLLSVKQIGYPEARIILSQCVIYLACSPKSNTAY
RAINQALDCVQKGSLYPIPKHLLPNAKDYLYPHDYNGYVKQDYLEKPLDLVSSQGIGFEKTLLEWLDKIRN
Nucleotide
Download Length: 1176 bp
>NTDB_id=42398 HPSH417_RS02060 WP_000060218.1 414066..415241(-) (rarA) [Helicobacter pylori Shi417]
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTTAAGCTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCTTGGTGCTAAAGCCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAGTCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCTCTAAATTTAGCCGCTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCTAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
ATGAGCCTGACTTCGCTTTTAAACCCAAAAAGCCTAGAAGATTTTTTAGGCCAAGAGCATCTAATAGGCAAAGACGCCCC
CTTATTTAAAGCCTTACAATCCAAACACTTCCCCCACGCCTTTTTCTATGGCCCTCCTGGCGTGGGTAAAACAAGTCTGG
CTCAAATCATCGCCCGCATGCTAGAGCGCCCCATTCTTTTATTTAATGCGACGGATTTTAAGCTAGAGGATTTACGCCTT
AAGCTTAAAAATTACCAAAACACCCTTTTAAAACCGGTTGTTTTTATTGATGAAACCCACAGATTGAATAAAACCCAACA
AGAATTTTTACTCCCCATTATGGAAAAAGATCACGCTTTAATCTTAGGGGCTAGCACGCAAGATCCTAATTACAGCCTAA
GCCATGCGATCCGCTCAAGAAGTTTTATTTTTGAATTAACCCCCCTAAACAAGAGCGATTTAGACAAGCTTTGCGCTAAA
GCTTTAACATTGCTCAAAAAACAAATAGAGCTTGGTGCTAAAGCCTATCTTTTAAACAACAGCGCTGGCGATGCCAGAGC
GTTATTAAACCTTTTAGATTTGAGCGCTAAAATAGAAGATCCTATCACTTTAGAAACGCTGCAGTCCTTACGGCCTCATA
GCCTAAATGACGGATCTTATAGTGATGATACGCATTATAATCTTACTAGCGCTCTAATCAAGTCTTTAAGAGGGAGCGAT
GAAAACGCTTCCATTTATTATTTGGCGCGCTTGATTGCTGGCGGGGAAAACCCGGAATTTATCGCTAGAAGGCTGGTGAT
TTTTGCGAGCGAAGATATTGGTAACGCTAACCCAAACGCTCTAAATTTAGCCGCTTCTTGCTTGCTTTCAGTCAAACAAA
TCGGCTACCCTGAAGCGCGCATCATTTTAAGCCAATGCGTGATTTATCTGGCTTGTTCGCCTAAGTCTAACACGGCTTAT
AGAGCGATCAATCAGGCTTTGGATTGCGTTCAAAAAGGCTCACTCTACCCCATTCCTAAACACCTGCTGCCTAACGCTAA
AGATTACCTTTACCCGCATGATTATAACGGCTATGTCAAACAAGATTATTTGGAAAAACCCCTAGATTTGGTTTCTTCTC
AAGGCATAGGGTTTGAAAAAACCCTTTTAGAATGGCTTGATAAGATAAGAAATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rarA | Bacillus subtilis subsp. subtilis str. 168 |
36.893 |
100 |
0.389 |