Detailed information NTG0420001

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: KPZ59_RS09065
• Genome accession: NZ_CP048131
• Coordinates: 1859414..1860115 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain D46
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1854414..1865115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KPZ59_RS09030 (KPZ59_01814)	kdsB	1854937..1855698 (+)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
KPZ59_RS09035 (KPZ59_01815)	-	1855710..1856690 (+)	981	WP_001075418.1	DNA polymerase III subunit delta'	-
KPZ59_RS09040 (KPZ59_01816)	-	1856702..1857043 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
KPZ59_RS09045 (KPZ59_01817)	-	1857061..1857834 (+)	774	WP_000497298.1	TatD family hydrolase	-
KPZ59_RS09050 (KPZ59_01818)	-	1857872..1858480 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
KPZ59_RS09055 (KPZ59_01819)	-	1858490..1859044 (+)	555	WP_000841379.1	type II secretion system protein	-
KPZ59_RS09060 (KPZ59_01820)	xcpV	1859034..1859414 (+)	381	WP_000836910.1	type II secretion system minor pseudopilin GspI	Machinery gene
KPZ59_RS09065 (KPZ59_01821)	xcpW	1859414..1860115 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
KPZ59_RS09070 (KPZ59_01822)	gspK	1860115..1861074 (+)	960	WP_000301481.1	type II secretion system minor pseudopilin GspK	-
KPZ59_RS09075 (KPZ59_01823)	-	1861304..1861900 (+)	597	WP_000908451.1	6-pyruvoyl trahydropterin synthase family protein	-
KPZ59_RS09080 (KPZ59_01824)	ung	1861951..1862664 (+)	714	WP_001177528.1	uracil-DNA glycosylase	-
KPZ59_RS09085 (KPZ59_01825)	-	1862661..1863785 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
KPZ59_RS09090 (KPZ59_01826)	tadA	1863792..1864295 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
KPZ59_RS09095 (KPZ59_01827)	-	1864365..1864808 (+)	444	WP_001246675.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=420001 KPZ59_RS09065 WP_000594572.1 1859414..1860115(+) (xcpW) [Acinetobacter baumannii strain D46]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=420001 KPZ59_RS09065 WP_000594572.1 1859414..1860115(+) (xcpW) [Acinetobacter baumannii strain D46]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991