Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   ATC_RS13020 Genome accession   NC_015850
Coordinates   2656373..2657422 (-) Length   349 a.a.
NCBI ID   WP_004869054.1    Uniprot ID   A0A1E7YRY7
Organism   Acidithiobacillus caldus SM-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2651373..2662422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATC_RS12995 (Atc_2599) - 2651524..2652231 (+) 708 WP_014003505.1 MBL fold metallo-hydrolase -
  ATC_RS13000 (Atc_2600) - 2652224..2652733 (+) 510 WP_014003506.1 hypothetical protein -
  ATC_RS13005 (Atc_2601) - 2652867..2654000 (+) 1134 WP_004869047.1 NAD(P)/FAD-dependent oxidoreductase -
  ATC_RS17915 (Atc_2602) - 2654070..2654579 (-) 510 WP_014003507.1 hypothetical protein -
  ATC_RS17920 (Atc_2603) - 2654617..2655252 (-) 636 WP_014003508.1 glycosyltransferase -
  ATC_RS13015 (Atc_2604) pilU 2655234..2656364 (-) 1131 WP_014003509.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  ATC_RS13020 (Atc_2605) pilT 2656373..2657422 (-) 1050 WP_004869054.1 type IV pilus twitching motility protein PilT Machinery gene
  ATC_RS13025 (Atc_2606) - 2657493..2658185 (+) 693 WP_226047714.1 YggS family pyridoxal phosphate-dependent enzyme -
  ATC_RS13030 (Atc_2607) proC 2658182..2659012 (+) 831 WP_014003511.1 pyrroline-5-carboxylate reductase -
  ATC_RS13035 (Atc_2608) - 2659009..2659290 (+) 282 WP_014003512.1 YggT family protein -
  ATC_RS13040 (Atc_2609) - 2659310..2659657 (+) 348 WP_004873263.1 DUF167 domain-containing protein -
  ATC_RS13045 (Atc_2610) bioB 2659629..2660576 (+) 948 WP_004873262.1 biotin synthase BioB -
  ATC_RS13050 (Atc_2611) - 2660621..2661175 (-) 555 WP_004873261.1 acyloxyacyl hydrolase -
  ATC_RS13055 (Atc_2612) - 2661352..2662365 (+) 1014 WP_014003513.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 38578.33 Da        Isoelectric Point: 6.9775

>NTDB_id=41929 ATC_RS13020 WP_004869054.1 2656373..2657422(-) (pilT) [Acidithiobacillus caldus SM-1]
MDITELLTFAVKNNASDTHMSAGLPPMLRIHGDIRHLNVEPLDAKTVHAMIYDIMNDAQRKWFEENLEIDFAIDLAGVAR
FRVNAFNQDRGPAAAFRTIPAKVLSLEDLNAPKVFKDIINVPRGLVLVTGPTGSGKSTTLAAMVDHINQQRADHIITIED
PIEFLHTPKKCLINQREVGPHTHSFANALRSALREDPDVILVGELRDLETMRLALTAAETGHVVFATLHTSSAPKTIDRI
VDSFPGGEKDMVRAMLSESLRAVISQTLLKTADGKGRVAAHEIMIANPAIRNLIRENKIAQMYSVIQTGQNQGMQTLDQC
LADLVRAHRITREEALRRVQNKDSFAAVA

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=41929 ATC_RS13020 WP_004869054.1 2656373..2657422(-) (pilT) [Acidithiobacillus caldus SM-1]
GTGGATATCACCGAACTGCTGACTTTTGCCGTCAAGAACAATGCCTCCGACACCCACATGTCCGCCGGCTTGCCGCCCAT
GTTGCGCATCCATGGCGACATCCGCCATCTCAATGTCGAGCCCCTGGACGCCAAGACGGTACACGCCATGATCTACGACA
TCATGAACGATGCCCAGCGCAAATGGTTTGAAGAAAATCTCGAGATCGACTTCGCCATCGATCTGGCCGGGGTGGCGCGC
TTCCGTGTCAATGCCTTCAATCAGGACCGTGGGCCGGCGGCGGCCTTCCGCACCATTCCCGCCAAGGTGCTGAGCCTCGA
GGATCTGAATGCGCCCAAGGTCTTCAAGGATATCATCAACGTTCCACGCGGTCTGGTCCTGGTGACGGGGCCCACGGGAT
CGGGCAAATCCACGACCCTGGCCGCCATGGTCGATCACATCAACCAGCAGCGTGCCGACCACATCATCACCATCGAGGAT
CCCATCGAATTCCTCCACACCCCCAAAAAATGCCTCATCAACCAGCGCGAGGTGGGGCCACATACCCACTCCTTTGCCAA
TGCCCTGCGCTCGGCCCTGCGTGAGGATCCGGACGTCATTCTCGTGGGCGAGTTGCGCGATCTGGAGACCATGCGCCTGG
CCCTTACCGCTGCGGAAACCGGCCACGTCGTCTTCGCGACCCTGCACACGAGCTCGGCGCCGAAAACCATCGATCGTATC
GTCGACTCCTTCCCCGGCGGCGAGAAGGACATGGTGCGGGCCATGCTGTCGGAGTCCCTGCGCGCGGTCATCTCCCAGAC
CCTCCTCAAAACGGCGGATGGCAAGGGCCGAGTGGCCGCCCACGAAATCATGATTGCCAACCCGGCCATCCGCAACCTCA
TCCGCGAAAACAAGATTGCGCAGATGTACTCGGTGATTCAAACCGGTCAGAATCAGGGCATGCAGACCCTGGATCAGTGT
CTTGCGGACCTCGTCCGCGCCCACCGTATCACCCGCGAGGAGGCGCTTCGGCGGGTGCAGAACAAAGACAGCTTCGCTGC
CGTCGCCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E7YRY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

68.406

98.854

0.676
  pilT Acinetobacter baumannii D1279779

68.406

98.854

0.676
  pilT Acinetobacter baumannii strain A118

68.406

98.854

0.676
  pilT Pseudomonas aeruginosa PAK

68.116

98.854

0.673
  pilT Pseudomonas stutzeri DSM 10701

67.826

98.854

0.67
  pilT Neisseria meningitidis 8013

66.763

99.14

0.662
  pilT Acinetobacter baylyi ADP1

66.667

98.854

0.659
  pilT Neisseria gonorrhoeae MS11

66.474

99.14

0.659
  pilT Legionella pneumophila strain Lp02

65.507

98.854

0.648
  pilT Legionella pneumophila strain ERS1305867

65.507

98.854

0.648
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

65

97.421

0.633
  pilT Vibrio cholerae strain A1552

65

97.421

0.633
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.009

100

0.53
  pilU Acinetobacter baylyi ADP1

42.899

96.848

0.415
  pilU Pseudomonas stutzeri DSM 10701

42.262

96.275

0.407
  pilU Vibrio cholerae strain A1552

40.476

96.275

0.39

Multiple sequence alignment