Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SBG_RS13925 Genome accession   NC_015761
Coordinates   2966944..2967924 (-) Length   326 a.a.
NCBI ID   WP_001055663.1    Uniprot ID   -
Organism   Salmonella bongori NCTC 12419     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2961944..2972924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBG_RS13895 (SBG_2693) endA 2962410..2963117 (+) 708 WP_000286137.1 deoxyribonuclease I -
  SBG_RS13900 (SBG_2694) rsmE 2963194..2963925 (+) 732 WP_015703003.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SBG_RS13905 (SBG_2695) gshB 2963945..2964892 (+) 948 WP_000593292.1 glutathione synthase -
  SBG_RS13910 (SBG_2696) - 2965108..2965671 (+) 564 WP_001053162.1 YqgE/AlgH family protein -
  SBG_RS13915 (SBG_2697) ruvX 2965671..2966087 (+) 417 WP_000072425.1 Holliday junction resolvase RuvX -
  SBG_RS13920 (SBG_2698) - 2966127..2966813 (-) 687 WP_000098342.1 hypothetical protein -
  SBG_RS13925 (SBG_2699) pilT 2966944..2967924 (-) 981 WP_001055663.1 type IV pilus twitching motility protein PilT Machinery gene
  SBG_RS13930 (SBG_2700) - 2967942..2968655 (+) 714 WP_000997813.1 YggS family pyridoxal phosphate-dependent enzyme -
  SBG_RS13935 (SBG_2701) - 2968664..2969230 (+) 567 WP_001094852.1 YggT family protein -
  SBG_RS13940 (SBG_2702) yggU 2969227..2969517 (+) 291 WP_001277203.1 DUF167 family protein YggU -
  SBG_RS13945 (SBG_2703) - 2969525..2970118 (+) 594 WP_001174772.1 XTP/dITP diphosphatase -
  SBG_RS13950 (SBG_2704) hemW 2970111..2971247 (+) 1137 WP_001096526.1 radical SAM family heme chaperone HemW -
  SBG_RS13955 (SBG_2705) ansB 2971353..2972399 (-) 1047 WP_000394194.1 L-asparaginase 2 -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36276.54 Da        Isoelectric Point: 7.5842

>NTDB_id=41871 SBG_RS13925 WP_001055663.1 2966944..2967924(-) (pilT) [Salmonella bongori NCTC 12419]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKRGRIENAPFIAPDVDMLLRDWLNDAQQYQWRTHGQLDFAVSLSGAQRLRA
SAFRHQQGASLALRLLPDRCPSLEEIQTPPIVPTLLASENGLILVTGATGSGKSTTLAAMVGYLNHHVDKHILTLEDPIE
YRYASQRCLIQQREVGQHCATFAAGLRAALREDPDVILLGELRDSETIHLALTAAETGHLVLATLHTRGAAQAIERLVDS
FPAQEKEPMRRQLAGSLRAVLSQKLEADKLEGRVALFELLINTPATGNLIREGKLHQLPHVIQTGQQQGMMTFAQSAQWR
QTQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=41871 SBG_RS13925 WP_001055663.1 2966944..2967924(-) (pilT) [Salmonella bongori NCTC 12419]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAATGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACGAGGACGAATAGAGAATGCGCCTTTTATCGCGCCTGATGTTGATATGCTTCTGCGTGATTGGCTTAATG
ACGCGCAACAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTCTCGCTTTCAGGGGCGCAACGTCTGCGTGCC
AGCGCGTTCAGACACCAACAGGGAGCATCGTTGGCGCTACGGTTATTGCCAGATCGTTGTCCTTCGCTGGAGGAGATCCA
GACGCCCCCCATCGTGCCGACACTGCTTGCCAGCGAGAATGGGCTGATACTGGTTACCGGCGCGACTGGCAGCGGTAAAT
CTACCACGCTGGCGGCGATGGTGGGTTATCTTAATCACCATGTCGATAAGCATATCCTGACCCTGGAAGATCCTATAGAG
TACCGTTACGCCAGCCAGCGTTGCCTGATACAGCAGCGGGAAGTCGGCCAGCATTGCGCCACTTTCGCCGCCGGGCTGCG
TGCGGCGCTGCGTGAAGATCCGGATGTCATCCTGCTGGGCGAGTTGCGTGATAGCGAGACCATTCATCTGGCGCTAACGG
CGGCGGAGACGGGACATTTGGTACTGGCGACCTTGCATACCCGCGGTGCGGCGCAGGCCATCGAAAGACTGGTGGATAGC
TTTCCGGCGCAGGAGAAAGAGCCGATGCGTCGTCAACTGGCGGGCAGCCTGCGCGCCGTACTATCGCAAAAACTGGAAGC
AGACAAACTGGAGGGGCGCGTGGCGTTATTTGAATTACTGATTAATACGCCAGCTACAGGGAATTTGATCCGTGAAGGTA
AACTCCATCAGTTGCCCCACGTGATACAGACCGGGCAGCAGCAGGGGATGATGACATTTGCCCAAAGCGCACAATGGCGT
CAGACACAGGGGCGGCTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.624

100

0.488
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.624

100

0.488
  pilT Neisseria meningitidis 8013

47.561

100

0.479
  pilT Neisseria gonorrhoeae MS11

47.256

100

0.475
  pilT Acinetobacter baylyi ADP1

45.872

100

0.46
  pilT Acinetobacter baumannii strain A118

45.566

100

0.457
  pilT Acinetobacter nosocomialis M2

45.566

100

0.457
  pilT Acinetobacter baumannii D1279779

45.566

100

0.457
  pilT Pseudomonas aeruginosa PAK

46.835

96.933

0.454
  pilT Pseudomonas stutzeri DSM 10701

46.519

96.933

0.451
  pilT Legionella pneumophila strain ERS1305867

45.912

97.546

0.448
  pilT Legionella pneumophila strain Lp02

45.912

97.546

0.448
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

39.498

97.853

0.386
  pilU Pseudomonas stutzeri DSM 10701

36.97

100

0.374
  pilU Acinetobacter baylyi ADP1

36.646

98.773

0.362

Multiple sequence alignment