Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   E3S86_RS05325 Genome accession   NZ_CP047837
Coordinates   1047493..1048062 (+) Length   189 a.a.
NCBI ID   WP_160175306.1    Uniprot ID   -
Organism   Staphylococcus aureus strain UP_719     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1042493..1053062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3S86_RS05290 (E3S86_05290) - 1043760..1043993 (-) 234 WP_072468905.1 lactococcin 972 family bacteriocin -
  E3S86_RS05295 (E3S86_05295) - 1043990..1044091 (-) 102 WP_031785452.1 hypothetical protein -
  E3S86_RS14060 - 1044630..1044707 (-) 78 WP_099112139.1 putative holin-like toxin -
  E3S86_RS05305 (E3S86_05305) - 1045006..1045608 (-) 603 WP_001033862.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  E3S86_RS05310 (E3S86_05310) - 1045623..1045799 (-) 177 WP_000214898.1 YkvS family protein -
  E3S86_RS05315 (E3S86_05315) - 1045998..1046984 (+) 987 WP_000668824.1 lipoate--protein ligase -
  E3S86_RS05320 (E3S86_05320) - 1047065..1047283 (-) 219 WP_000876826.1 IDEAL domain-containing protein -
  E3S86_RS05325 (E3S86_05325) comK/comK1 1047493..1048062 (+) 570 WP_160175306.1 competence protein ComK Regulator
  E3S86_RS05340 (E3S86_05340) - 1048549..1050060 (-) 1512 WP_000414181.1 bifunctional metallophosphatase/5'-nucleotidase -
  E3S86_RS05345 (E3S86_05345) - 1050199..1051557 (-) 1359 WP_000021872.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22677.93 Da        Isoelectric Point: 9.5795

>NTDB_id=417516 E3S86_RS05325 WP_160175306.1 1047493..1048062(+) (comK/comK1) [Staphylococcus aureus strain UP_719]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQNENIWLNMHYIESIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMIS
KNPDQPIDYNKATLNVFEALTRYYLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=417516 E3S86_RS05325 WP_160175306.1 1047493..1048062(+) (comK/comK1) [Staphylococcus aureus strain UP_719]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGACGATCAAAGAAA
CGGTAGTGAAATAATTCGGTTTGACAAAACGCGTATTCAAAATCCTTTTAAAGTCCAGAAAATCATTGAACGCTCTTGCA
AATTTTATGGTAATACTTATCTTGGCAAGAAAGCAGAGACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCATTATTTCCAACTTATTTTTTTCCAACACATTCTGACAGACAAAATGAAAATATTTGGTTAAATATGCATTA
TATCGAAAGTATTAAAGAATTAAAAAATCGTAAATGTAAAGTGACATTTATTAATAATGAATCAATCATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTATTACATGGTAGATAAACAATCTCGCATGATATCA
AAAAATCCCGACCAACCAATAGATTATAATAAAGCCACATTGAATGTGTTTGAAGCATTGACACGCTATTATTTATTTGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

99.471

100

0.995
  comK/comK1 Staphylococcus aureus N315

99.471

100

0.995

Multiple sequence alignment