Detailed information NTG0415460

Bioinformatically predicted

Overview

• Name: comP
• Type: Machinery gene
• Locus tag: GVI47_RS23380
• Genome accession: NZ_CP047698
• Coordinates: 4998954..4999385 (-)
• Length: 143 a.a.
• NCBI ID: WP_160288283.1
• Uniprot ID: -
• Organism: Pseudomonas knackmussii strain N1-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4993954..5004385

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GVI47_RS23360	nadC	4994953..4995801 (+)	849	WP_160288280.1	carboxylating nicotinate-nucleotide diphosphorylase	-
GVI47_RS23365	-	4995802..4996872 (-)	1071	WP_236658329.1	diguanylate cyclase	-
GVI47_RS23375	-	4997172..4998893 (-)	1722	WP_160288282.1	phosphoethanolamine transferase	-
GVI47_RS23380	comP	4998954..4999385 (-)	432	WP_160288283.1	pilin	Machinery gene
GVI47_RS23385	pilB	4999613..5001316 (+)	1704	WP_160288284.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GVI47_RS23390	pilC	5001320..5002537 (+)	1218	WP_160288285.1	type II secretion system F family protein	Machinery gene
GVI47_RS23395	pilD	5002540..5003412 (+)	873	WP_160288286.1	A24 family peptidase	Machinery gene
GVI47_RS23400	coaE	5003498..5004106 (+)	609	WP_160288287.1	dephospho-CoA kinase	-
GVI47_RS23405	yacG	5004103..5004312 (+)	210	WP_160288288.1	DNA gyrase inhibitor YacG	-

Sequence

Protein

• Length: 143 a.a.
• Molecular weight: 14444.49 Da
• Isoelectric Point: 7.5878

>NTDB_id=415460 GVI47_RS23380 WP_160288283.1 4998954..4999385(-) (comP) [Pseudomonas knackmussii strain N1-2]
MNAQKGFTLIELMIVVAIIGILAAIALPAYQDYTVRSRVSELAVMASSMKATVGENIANAGTVDATACNGVNTIGTGNST
KNTASTGCASGVITVTGTADAKGVALVYSPSLNATTGVVTWACTTTSTNFKYVPAECRNVAGT

Nucleotide

• Length: 432 bp

>NTDB_id=415460 GVI47_RS23380 WP_160288283.1 4998954..4999385(-) (comP) [Pseudomonas knackmussii strain N1-2]
ATGAACGCTCAGAAAGGCTTTACCCTGATCGAACTCATGATCGTGGTTGCGATCATCGGTATCCTGGCTGCAATCGCTCT
GCCGGCGTACCAAGACTACACCGTTCGTTCTCGTGTTTCTGAATTGGCGGTAATGGCGTCTAGCATGAAAGCTACTGTCG
GCGAAAATATTGCCAACGCAGGGACTGTTGACGCCACTGCTTGTAACGGCGTTAATACCATTGGTACTGGCAACTCTACC
AAAAACACTGCTTCCACTGGTTGTGCTTCCGGTGTAATTACGGTAACTGGTACCGCTGATGCCAAAGGTGTTGCGCTGGT
TTATAGTCCTTCGCTGAATGCCACCACCGGCGTTGTTACTTGGGCTTGCACCACCACCTCGACTAACTTCAAGTACGTTC
CGGCTGAGTGCCGCAATGTTGCAGGTACTTGA

Domains

Predicted by InterproScan.

• Pilin (bacterial filament) (Pilin) (35-138)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comP	Acinetobacter baylyi ADP1	55.705	100	0.58
pilA	Ralstonia pseudosolanacearum GMI1000	46.835	100	0.517
pilA2	Legionella pneumophila str. Paris	53.285	95.804	0.51
pilA2	Legionella pneumophila strain ERS1305867	48.966	100	0.497
pilA	Pseudomonas aeruginosa PAK	39.474	100	0.42
pilE	Neisseria gonorrhoeae MS11	37.267	100	0.42
pilA/pilAI	Pseudomonas stutzeri DSM 10701	43.066	95.804	0.413
pilA/pilAII	Pseudomonas stutzeri DSM 10701	39.716	98.601	0.392
pilA	Haemophilus influenzae Rd KW20	41.481	94.406	0.392
pilA	Haemophilus influenzae 86-028NP	40.741	94.406	0.385
pilA/pilA1	Eikenella corrodens VA1	37.162	100	0.385
pilA	Glaesserella parasuis strain SC1401	38.235	95.105	0.364