Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   HUG14_RS03705 Genome accession   NZ_CP060580
Coordinates   754983..758594 (+) Length   1203 a.a.
NCBI ID   WP_187398497.1    Uniprot ID   -
Organism   Lactococcus lactis strain K_LL005     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 749983..763594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUG14_RS03695 (HUG14_03695) dnaN 750443..751585 (+) 1143 WP_003130856.1 DNA polymerase III subunit beta -
  HUG14_RS03700 (HUG14_03700) rexB 751691..754990 (+) 3300 WP_187398496.1 ATP-dependent nuclease subunit B -
  HUG14_RS03705 (HUG14_03705) rexA 754983..758594 (+) 3612 WP_187398497.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  HUG14_RS03710 (HUG14_03710) - 758631..758831 (+) 201 WP_003132155.1 DUF951 domain-containing protein -
  HUG14_RS03715 (HUG14_03715) - 758841..759398 (-) 558 WP_033900600.1 helix-turn-helix domain-containing protein -
  HUG14_RS03720 (HUG14_03720) ychF 759680..760795 (+) 1116 WP_015425597.1 redox-regulated ATPase YchF -
  HUG14_RS03725 (HUG14_03725) - 760907..761230 (+) 324 WP_033900596.1 helix-turn-helix domain-containing protein -
  HUG14_RS03730 (HUG14_03730) - 761486..761833 (+) 348 WP_058217594.1 hypothetical protein -

Sequence

Protein


Download         Length: 1203 a.a.        Molecular weight: 138776.85 Da        Isoelectric Point: 5.0133

>NTDB_id=415331 HUG14_RS03705 WP_187398497.1 754983..758594(+) (rexA) [Lactococcus lactis strain K_LL005]
MSEVKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMRLERDLKKARQES
SDENQARRLTLALQNLSNADIGTMDSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSEDDGLNISK
QKFEELIKNFSKDRNIAGFQKVVYTIYRFASATENPIKWLENQFLKGFETYKSLTDLSADFSADIKENLLIFFELLETSL
TNGVIAKKGAGRDKANLILDNKNELLEAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSAQKQDLVGSKSKPG
EIRKFVDKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEENPDIRETLREHYDEI
MIDEYQDTSHTQERMLELLSNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKDYAKTENPNQLIRLKENFRSRGEVLTFTN
DIFKHLMDEKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETDESEVRISDGEIKGAAQEIKKLIEAG
VEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDEL
TRISTQGSHDLRFWDKILLSLNKEGQNPELINPSLENKLKAFHKKFTEWRKLVNQVAIHDLLWKIYTETYYFDYVGALKN
GEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRF
NDRDLKEDVILSRENGLGMKLIADLKDEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLV
GKIKETDKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPIKLNVYTKEELEAEKLEFTSQPDFKKLVEE
SEKFDNIMAYSDEIQKAQKIMNYEYPHQAATELSSIQTPSQVKKRSYEKQLQVGEIQPKSEFTRVKKLDFSDFGPKKVTA
AEIGSATHSFMQYADFSQADLFSFQATLDEMGFDEKIKNQIDIAKILTLFDTNFGQFLSENVDKTVKEAPFSMLRTDEFA
KEQYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQVDKYLILLGGPQQVFVEK
LDD

Nucleotide


Download         Length: 3612 bp        

>NTDB_id=415331 HUG14_RS03705 WP_187398497.1 754983..758594(+) (rexA) [Lactococcus lactis strain K_LL005]
ATGAGTGAAGTAAAATTAACTCCAGAGCAAAATGAAGCCATTCATAGTTCTGGTAAGAATATTCTAGTTTCAGCGAGTGC
TGGTTCCGGAAAAACTTTTGTTATGGCTCAAAGAATTGTCGAGAAAGTCAAACAAGGAATTGAAATTGATCGACTTTTCA
TTTCCACATTTACAAAAAAAGCAGCAAGCGAATTACGGATGCGGCTTGAGCGAGATTTAAAAAAAGCCAGACAAGAAAGT
TCTGATGAAAATCAAGCTCGTAGGTTGACACTTGCTTTACAGAACCTGTCAAATGCTGATATTGGAACTATGGATAGTTT
CACCCAAAAATTGACAAAAACGAATTTCAATCGAGTAAATATTGACCCGAATTTCCGAATCTTAGCTGATCAAACAGAGA
GTGATTTAATTAGACAAGAAGTCTTTGAACAATTGGTTGAGTCTTATCTATCAGAAGATGATGGATTGAATATTTCAAAA
CAAAAATTTGAAGAACTTATAAAAAATTTTTCTAAAGACAGAAATATTGCTGGTTTTCAAAAAGTAGTTTACACTATTTA
CCGTTTTGCGTCAGCAACTGAAAATCCAATAAAGTGGTTAGAAAATCAATTTTTAAAAGGTTTTGAAACATATAAATCAC
TGACAGACTTGTCAGCAGATTTTTCAGCAGATATAAAAGAGAATTTACTGATATTTTTTGAACTTCTAGAAACTTCATTA
ACCAATGGAGTAATTGCTAAAAAAGGGGCTGGACGTGATAAGGCCAATCTTATTTTAGATAATAAAAATGAACTCTTAGA
AGCAATAACCACTAAAGATTTTGCAACTTTCACAGAACTATTTTTATCAATAGATACAGATATTCGAGTGGGTTCTTCAA
AAGATGAAATACTTTCGGCTCTGAAAAAAGATTTTTCAGCACAAAAGCAAGACTTAGTCGGCTCAAAATCCAAACCTGGA
GAAATTCGGAAGTTTGTTGATAAAATAAAACATGGTCAGTTGATTGAAAAATATCAAAATCAAGCATTTGAAATCGCAGA
AAACTTACAAAAATTTGTTATTGAGTTTTACCAAAGTTATTTAGAACGTAAAAAGAATGAAAATGCCTTTGAGTACTCTG
ATATCGCACACTTTGCCATCGAAATTTTAGAGGAAAATCCAGATATACGTGAAACTTTAAGAGAACATTATGATGAAATC
ATGATTGATGAGTATCAGGATACCAGCCACACTCAGGAGCGAATGCTGGAACTTTTATCGAATGGACATAATCTCTTCAT
GGTTGGTGATATTAAGCAATCAATTTATGGCTTTCGTTTAGCTGACCCTGGCCTCTTTTTAGAAAAATATAAAGACTATG
CCAAGACAGAAAATCCAAATCAACTAATTCGCTTAAAAGAAAACTTTCGTTCACGTGGTGAGGTTTTAACATTTACAAAT
GATATCTTTAAACACCTGATGGATGAAAAATTAGGTGAGATGACTTATGGCAAAGAAGAAGCATTAGTTCAAGGAAATAT
TACTGATTATCCAGTTGAATCTGAGAAAGATTTTTATCCAGAACTTCTTTTATACAAAGAAAATACAAGTGATGAAGAAA
CAGATGAATCCGAAGTAAGAATTTCGGATGGAGAGATTAAAGGAGCAGCTCAAGAAATAAAAAAATTGATTGAAGCTGGA
GTTGAACCAAAAGATATAGCAATCTTGGTTCGTTCTAAATCAAATAATAATAAAATTGAGGATATTCTGCTTAGTTACGA
TATTCCGGTCGTTCTTGATGAAGGTCGAGTTGATTTTTTGAAATCAATGGAAGTCTTAATTATGCTAGACGTTTTACGAG
CAATTGATAATCCACTCTATGATTTATCATTGGTTGCAATGTTAAGGTCTCCGTTATTTGGATTTAATGAAGATGAATTA
ACTAGAATCAGTACTCAAGGAAGCCATGACCTTCGATTTTGGGATAAAATTCTTTTGTCACTTAATAAAGAAGGACAAAA
TCCAGAACTTATCAATCCTTCCTTAGAGAACAAGCTTAAAGCATTTCATAAGAAGTTTACAGAGTGGCGTAAACTTGTAA
ACCAAGTTGCAATTCATGATTTACTTTGGAAAATATATACCGAAACCTACTATTTTGACTATGTTGGTGCCTTAAAAAAT
GGTGAAATGCGCCAAGCGAACTTACAAGCCTTAGCGGTTCGAGCAGAATCATATGAAAGTTCTGGTTATAAAGGATTATT
TAAATTTGTAAGATTAATCAACAAATTTATGGAACAAAATAATGATTTAGCTTCTGTTAATATAAAACTTCCTCAAAATG
CTGTTCGAGTGATGACCTTCCATAAATCAAAAGGATTAGAATTTGATTATGTCTTTTTAATGAATTTACAATCTCGTTTC
AACGATCGTGATTTGAAAGAAGATGTTATCCTAAGTCGTGAAAATGGTTTAGGAATGAAGCTTATTGCTGATTTAAAGGA
TGAAGCAGATGTTATAACTGATTTCCCTTATGCTTTAGTGAAAATGGAAACATTCCCTTATATGGTGAATAAAGACTTAA
AACAAAGAGCAGCTCTCTCAGAAGAAATGCGTGTTTTATATGTTGCATTTACACGAGCAAAGAAAAAACTTTATCTTGTT
GGAAAAATAAAAGAAACAGATAAAAAATCAGGACTTGACCTTTATGATAATGCAAGTTTAGAAGGGAAGATTTTAGAAGA
TAAATTTCGTAATTCAAGTCGCGGTTTTCAACACTGGATATTGGCGCTTCAAAATGCCACAAAACTTCCGATTAAACTCA
ATGTCTACACAAAAGAAGAGTTGGAAGCAGAAAAACTTGAATTTACAAGTCAACCTGATTTCAAAAAATTGGTCGAAGAA
TCGGAAAAATTTGATAATATCATGGCCTATTCTGATGAAATACAAAAAGCTCAAAAAATTATGAATTATGAATATCCACA
TCAAGCAGCAACAGAGCTTTCAAGTATTCAAACACCAAGTCAGGTTAAAAAACGAAGCTACGAAAAACAATTACAAGTGG
GTGAAATTCAACCGAAAAGTGAATTTACTCGGGTCAAAAAACTAGATTTTTCTGATTTTGGTCCTAAGAAAGTTACTGCT
GCAGAAATCGGTTCGGCAACTCATAGTTTTATGCAGTATGCAGATTTTTCTCAAGCAGATTTATTTAGTTTTCAAGCGAC
ACTTGATGAAATGGGATTTGATGAAAAAATAAAAAATCAGATTGATATTGCTAAAATTTTGACTTTGTTTGATACAAATT
TCGGTCAGTTTTTGTCAGAAAATGTTGATAAAACAGTTAAAGAAGCACCATTTTCAATGTTGAGAACAGATGAATTTGCT
AAAGAGCAGTATATTGTTCGGGGAATTTGTGATGGATTTGTTAAACTTACTGATAAAATCGTTCTATTTGATTATAAGAC
GGATAGATTTACAAGTTCTTCAGCTATTTCTGAAATAAAAGAGCGTTATAGAGATCAGATGAATCTTTATAGTGAGGCTT
TGAAAAAAGCCTACGATGTCAACCAAGTTGACAAGTATCTCATTTTATTAGGAGGCCCTCAGCAAGTTTTTGTTGAAAAA
CTAGATGATTAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(463-879)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(6-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

41.345

100

0.419

Multiple sequence alignment