Detailed information NTG0412588

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GQR88_RS10980
• Genome accession: NZ_CP047315
• Coordinates: 2359841..2361028 (-)
• Length: 395 a.a.
• NCBI ID: WP_100555697.1
• Uniprot ID: -
• Organism: Burkholderia glumae AU6208
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2354841..2366028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GQR88_RS10960 (GQR88_10960)	-	2355039..2355608 (+)	570	WP_017423453.1	acyloxyacyl hydrolase	-
GQR88_RS10965 (GQR88_10965)	-	2355648..2356034 (+)	387	WP_015877060.1	nuclear transport factor 2 family protein	-
GQR88_RS10970 (GQR88_10970)	leuA	2356231..2357880 (-)	1650	WP_017423452.1	2-isopropylmalate synthase	-
GQR88_RS10975 (GQR88_10975)	ybiB	2358294..2359271 (-)	978	WP_015877058.1	DNA-binding protein YbiB	-
GQR88_RS10980 (GQR88_10980)	pilA	2359841..2361028 (-)	1188	WP_100555697.1	signal recognition particle-docking protein FtsY	Machinery gene
GQR88_RS10985 (GQR88_10985)	rsmD	2361216..2361830 (+)	615	WP_100555696.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GQR88_RS10990 (GQR88_10990)	coaD	2361941..2362441 (+)	501	WP_015877055.1	pantetheine-phosphate adenylyltransferase	-
GQR88_RS10995 (GQR88_10995)	-	2362586..2363908 (-)	1323	WP_017424335.1	TIGR00366 family protein	-
GQR88_RS11000 (GQR88_11000)	-	2364198..2364467 (+)	270	WP_015877053.1	YfhL family 4Fe-4S dicluster ferredoxin	-
GQR88_RS11005 (GQR88_11005)	hisC	2364532..2365599 (-)	1068	WP_026051572.1	histidinol-phosphate transaminase	-

Sequence

Protein

• Length: 395 a.a.
• Molecular weight: 41161.17 Da
• Isoelectric Point: 5.4803

>NTDB_id=412588 GQR88_RS10980 WP_100555697.1 2359841..2361028(-) (pilA) [Burkholderia glumae AU6208]
MFSFFKRLIGSKADDASQDAPAADEQASAAHAPDAAGHAAAAASRPAPAPAHDTEPTASPAAPVPAAPAPAAAPAPAAVP
AAPAVEVVPPPAPEPAAKKSWIARLRSGLSKTSTSLTNVFVNTRIDDELYEELEAALLMSDAGIDATEYLLGALREKVRA
ERLSDPLQVKAALRALLVDLLAPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQRFDQSVLLAAGDTFRAAARE
QLAIWGERNNVTVVQQESGDPAAVIFDAVGAARARKIDVVMADTAGRLPTQLHLMEELRKVKRVIGKAQSDAPHEVLLVI
DANTGQNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFNAEEFADALLG

Nucleotide

• Length: 1188 bp

>NTDB_id=412588 GQR88_RS10980 WP_100555697.1 2359841..2361028(-) (pilA) [Burkholderia glumae AU6208]
ATGTTCAGCTTCTTCAAACGATTGATCGGCTCGAAGGCCGACGACGCGTCGCAGGACGCGCCGGCGGCCGACGAGCAAGC
CAGCGCGGCTCACGCGCCGGACGCGGCCGGGCATGCCGCCGCCGCGGCGAGCCGGCCGGCGCCCGCGCCGGCACACGACA
CCGAACCCACCGCCAGCCCGGCTGCACCGGTGCCGGCCGCCCCCGCCCCTGCGGCCGCCCCCGCCCCTGCGGCCGTGCCC
GCCGCCCCCGCCGTCGAAGTCGTGCCGCCGCCCGCGCCTGAGCCGGCCGCGAAAAAATCCTGGATTGCACGACTACGCTC
CGGGCTCTCGAAGACGAGCACGAGCCTCACCAACGTGTTCGTCAATACCAGGATCGACGACGAACTCTACGAGGAGCTCG
AAGCCGCGCTGCTGATGTCCGATGCCGGCATCGACGCGACCGAATACCTGCTCGGCGCGCTGCGCGAGAAGGTGCGCGCC
GAACGCCTGAGCGATCCGCTGCAGGTGAAGGCCGCGCTGCGCGCGCTGCTCGTCGACCTGCTCGCGCCGCTCGAGAAATC
GCTGATGCTGGGCCGCGCCCAGCCGCTCGTGATGATGATCGCGGGCGTCAACGGAGCCGGCAAGACCACCAGCATCGGTA
AGCTCGCCAAGCACCTGCAGCGCTTCGACCAATCGGTGCTGCTGGCCGCCGGCGACACGTTCCGCGCGGCCGCGCGCGAG
CAGCTCGCGATCTGGGGCGAGCGCAACAACGTGACCGTGGTGCAGCAGGAAAGCGGCGATCCGGCCGCCGTGATATTCGA
TGCGGTCGGCGCCGCGCGCGCGCGCAAGATCGACGTGGTGATGGCCGACACCGCGGGCCGGTTGCCCACGCAGTTGCACC
TGATGGAGGAACTGCGCAAGGTCAAGCGCGTGATCGGCAAGGCGCAGAGCGACGCGCCGCACGAGGTGCTGCTCGTGATC
GACGCCAATACCGGCCAGAACGCGCTCGCCCAGGTGAAGGCATTCGACGACGCGCTGGGCCTGACCGGGCTCATCGTCAC
CAAGCTCGACGGCACCGCGAAGGGCGGCATTCTCGCCGCGATCGCGCGGCAGCGGCCGATACCCGTCTACTTCATCGGCG
TCGGCGAGAAGGTCGAGGACTTGCAGCCGTTCAACGCCGAGGAATTCGCCGACGCGCTGCTCGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (114-174)

• SRP54-type protein, GTPase domain (SRP54) (196-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.773	100	0.554