Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | GQ588_RS06165 | Genome accession | NZ_CP046996 |
| Coordinates | 1238964..1240040 (-) | Length | 358 a.a. |
| NCBI ID | WP_025205428.1 | Uniprot ID | - |
| Organism | Dehalobacter restrictus strain 12DCA | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1233964..1245040
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GQ588_RS06080 (GQ588_06075) | - | 1234772..1236436 (+) | 1665 | WP_019226756.1 | ribonuclease J | - |
| GQ588_RS06155 (GQ588_06150) | - | 1238258..1238449 (+) | 192 | WP_019226757.1 | hypothetical protein | - |
| GQ588_RS06160 (GQ588_06155) | - | 1238436..1238786 (+) | 351 | WP_019226758.1 | hypothetical protein | - |
| GQ588_RS06165 (GQ588_06160) | pilT | 1238964..1240040 (-) | 1077 | WP_025205428.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GQ588_RS06170 (GQ588_06165) | - | 1240076..1241755 (-) | 1680 | WP_019226760.1 | GspE/PulE family protein | - |
| GQ588_RS06175 (GQ588_06170) | - | 1241903..1242568 (+) | 666 | WP_019226761.1 | A24 family peptidase | - |
| GQ588_RS06180 (GQ588_06175) | - | 1242925..1244220 (-) | 1296 | WP_158208197.1 | helix-turn-helix domain-containing protein | - |
Sequence
Protein
Download Length: 358 a.a. Molecular weight: 39706.13 Da Isoelectric Point: 6.3419
>NTDB_id=409801 GQ588_RS06165 WP_025205428.1 1238964..1240040(-) (pilT) [Dehalobacter restrictus strain 12DCA]
MNLNIRDLLLMSLELKASDLHITTGLPPMFRINGILTPMANAKYLSPLDTKELVDELMDEPVKNRLQQKGEVDFSYTIPG
ISRFRVNVYSQRKSLAAAIRVIVPDIPSINELGLPDILKDLAMKPRGLILVTGPTGSGKSTTLAAMVRHMNTHRNSHVIT
IEDPIEYLHAHNQCMINQREIGDDTHAFADALRSALREDPDVILVGEMRDLETINTALMASETGHLVLSTLHTSSAATTI
DRIIDVFPPNQLQQIKVQLASVLQGIICQQLLPTMDGTGRVAAMEALIVNDAVRNMIREGKTHQIDTVIQTGIKAGMAPM
DYSLANLVKRKMVTLEEANLRCVNPELFSKYLDQPFIF
MNLNIRDLLLMSLELKASDLHITTGLPPMFRINGILTPMANAKYLSPLDTKELVDELMDEPVKNRLQQKGEVDFSYTIPG
ISRFRVNVYSQRKSLAAAIRVIVPDIPSINELGLPDILKDLAMKPRGLILVTGPTGSGKSTTLAAMVRHMNTHRNSHVIT
IEDPIEYLHAHNQCMINQREIGDDTHAFADALRSALREDPDVILVGEMRDLETINTALMASETGHLVLSTLHTSSAATTI
DRIIDVFPPNQLQQIKVQLASVLQGIICQQLLPTMDGTGRVAAMEALIVNDAVRNMIREGKTHQIDTVIQTGIKAGMAPM
DYSLANLVKRKMVTLEEANLRCVNPELFSKYLDQPFIF
Nucleotide
Download Length: 1077 bp
>NTDB_id=409801 GQ588_RS06165 WP_025205428.1 1238964..1240040(-) (pilT) [Dehalobacter restrictus strain 12DCA]
ATGAATCTAAATATCAGGGACTTACTTTTAATGTCATTGGAACTTAAAGCTTCTGACCTCCACATCACAACCGGTCTTCC
CCCAATGTTCAGAATCAATGGTATCTTGACTCCGATGGCAAATGCCAAGTATTTGTCTCCGTTGGACACCAAAGAGCTTG
TTGATGAACTAATGGATGAACCCGTGAAAAACCGTTTGCAGCAAAAGGGAGAAGTTGACTTTTCCTATACGATCCCTGGT
ATCAGCCGTTTCAGGGTTAACGTCTACAGCCAGCGAAAAAGCCTGGCGGCCGCGATCAGGGTCATTGTTCCGGATATTCC
AAGTATTAACGAGCTGGGACTGCCTGATATCCTGAAAGACCTCGCAATGAAACCCAGAGGTCTGATCCTGGTCACGGGTC
CGACCGGTTCCGGTAAATCCACTACCCTTGCTGCCATGGTGCGCCATATGAATACGCACCGCAACAGTCACGTCATTACC
ATCGAAGACCCGATCGAATATTTGCATGCCCATAATCAATGTATGATAAACCAGCGTGAGATTGGTGACGATACCCATGC
CTTTGCAGATGCTTTACGGTCTGCACTGCGTGAAGACCCCGATGTTATCTTGGTCGGTGAAATGCGCGACCTTGAGACGA
TCAACACGGCCCTGATGGCTTCAGAAACAGGCCACTTGGTCTTGTCCACCCTCCATACTTCATCCGCAGCGACTACCATT
GACCGGATCATCGATGTTTTTCCGCCGAATCAACTGCAGCAAATTAAAGTTCAGTTGGCATCTGTTCTTCAGGGCATTAT
CTGCCAGCAGCTGCTGCCTACTATGGATGGTACCGGACGTGTTGCAGCGATGGAAGCTCTCATCGTCAATGACGCTGTCC
GGAATATGATCCGTGAAGGCAAGACCCACCAGATTGATACGGTCATCCAGACTGGCATCAAAGCGGGTATGGCCCCGATG
GATTATTCTCTGGCGAATCTGGTTAAGCGGAAGATGGTAACCCTTGAGGAAGCTAACTTAAGATGCGTGAATCCTGAGTT
GTTCTCGAAGTATCTTGATCAGCCGTTTATATTCTAA
ATGAATCTAAATATCAGGGACTTACTTTTAATGTCATTGGAACTTAAAGCTTCTGACCTCCACATCACAACCGGTCTTCC
CCCAATGTTCAGAATCAATGGTATCTTGACTCCGATGGCAAATGCCAAGTATTTGTCTCCGTTGGACACCAAAGAGCTTG
TTGATGAACTAATGGATGAACCCGTGAAAAACCGTTTGCAGCAAAAGGGAGAAGTTGACTTTTCCTATACGATCCCTGGT
ATCAGCCGTTTCAGGGTTAACGTCTACAGCCAGCGAAAAAGCCTGGCGGCCGCGATCAGGGTCATTGTTCCGGATATTCC
AAGTATTAACGAGCTGGGACTGCCTGATATCCTGAAAGACCTCGCAATGAAACCCAGAGGTCTGATCCTGGTCACGGGTC
CGACCGGTTCCGGTAAATCCACTACCCTTGCTGCCATGGTGCGCCATATGAATACGCACCGCAACAGTCACGTCATTACC
ATCGAAGACCCGATCGAATATTTGCATGCCCATAATCAATGTATGATAAACCAGCGTGAGATTGGTGACGATACCCATGC
CTTTGCAGATGCTTTACGGTCTGCACTGCGTGAAGACCCCGATGTTATCTTGGTCGGTGAAATGCGCGACCTTGAGACGA
TCAACACGGCCCTGATGGCTTCAGAAACAGGCCACTTGGTCTTGTCCACCCTCCATACTTCATCCGCAGCGACTACCATT
GACCGGATCATCGATGTTTTTCCGCCGAATCAACTGCAGCAAATTAAAGTTCAGTTGGCATCTGTTCTTCAGGGCATTAT
CTGCCAGCAGCTGCTGCCTACTATGGATGGTACCGGACGTGTTGCAGCGATGGAAGCTCTCATCGTCAATGACGCTGTCC
GGAATATGATCCGTGAAGGCAAGACCCACCAGATTGATACGGTCATCCAGACTGGCATCAAAGCGGGTATGGCCCCGATG
GATTATTCTCTGGCGAATCTGGTTAAGCGGAAGATGGTAACCCTTGAGGAAGCTAACTTAAGATGCGTGAATCCTGAGTT
GTTCTCGAAGTATCTTGATCAGCCGTTTATATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
49.432 |
98.324 |
0.486 |
| pilT | Neisseria meningitidis 8013 |
49.28 |
96.927 |
0.478 |
| pilT | Neisseria gonorrhoeae MS11 |
48.991 |
96.927 |
0.475 |
| pilT | Acinetobacter baumannii strain A118 |
48.844 |
96.648 |
0.472 |
| pilT | Acinetobacter baylyi ADP1 |
48.844 |
96.648 |
0.472 |
| pilT | Acinetobacter baumannii D1279779 |
48.844 |
96.648 |
0.472 |
| pilT | Acinetobacter nosocomialis M2 |
48.844 |
96.648 |
0.472 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.254 |
93.575 |
0.461 |
| pilT | Vibrio cholerae strain A1552 |
49.254 |
93.575 |
0.461 |
| pilT | Pseudomonas aeruginosa PAK |
46.991 |
97.486 |
0.458 |
| pilT | Legionella pneumophila strain Lp02 |
46.705 |
97.486 |
0.455 |
| pilT | Legionella pneumophila strain ERS1305867 |
46.705 |
97.486 |
0.455 |
| pilT | Pseudomonas stutzeri DSM 10701 |
45.845 |
97.486 |
0.447 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.667 |
93.855 |
0.391 |
| pilU | Acinetobacter baylyi ADP1 |
40.95 |
94.134 |
0.385 |
| pilU | Vibrio cholerae strain A1552 |
39.938 |
90.223 |
0.36 |