Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GMX10_RS08390 Genome accession   NZ_CP046377
Coordinates   1826219..1827745 (-) Length   508 a.a.
NCBI ID   WP_039487954.1    Uniprot ID   A0AAP9IGU9
Organism   Pectobacterium parvum strain PZ1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1821219..1832745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GMX10_RS08365 (GMX10_08390) ytfR 1821374..1822894 (+) 1521 WP_039487966.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  GMX10_RS08370 (GMX10_08395) ytfT 1822881..1823891 (+) 1011 WP_039487949.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  GMX10_RS08375 (GMX10_08400) yjfF 1823891..1824853 (+) 963 WP_039487951.1 galactofuranose ABC transporter, permease protein YjfF -
  GMX10_RS08380 (GMX10_08405) hdfR 1824875..1825702 (-) 828 WP_039487968.1 HTH-type transcriptional regulator HdfR -
  GMX10_RS08385 (GMX10_08410) - 1825823..1826161 (+) 339 WP_010283921.1 DUF413 domain-containing protein -
  GMX10_RS08390 (GMX10_08415) comM 1826219..1827745 (-) 1527 WP_039487954.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  GMX10_RS08395 (GMX10_08420) ilvL 1828153..1828251 (+) 99 WP_072012468.1 ilv operon leader peptide -
  GMX10_RS08400 (GMX10_08425) ilvG 1828392..1830038 (+) 1647 WP_039487955.1 acetolactate synthase 2 catalytic subunit -
  GMX10_RS08405 (GMX10_08430) ilvM 1830117..1830377 (+) 261 WP_039487958.1 acetolactate synthase 2 small subunit -
  GMX10_RS08410 (GMX10_08435) - 1830403..1831329 (+) 927 WP_014916970.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55444.09 Da        Isoelectric Point: 6.6907

>NTDB_id=403619 GMX10_RS08390 WP_039487954.1 1826219..1827745(-) (comM) [Pectobacterium parvum strain PZ1]
MSLAVTYTRAMIGVQAPGVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKAGRQLILPDDNKREMTLIPQGEALMAGHL
LDVCAFLSGEEELLSCSDMTPVPQIGEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRERPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGESSATIRERVLTARQIQLKRANKINALLTSREIEKHCGLEMADATYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=403619 GMX10_RS08390 WP_039487954.1 1826219..1827745(-) (comM) [Pectobacterium parvum strain PZ1]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCGCCGGGCGTTTATATCGAAGTTCACATCAGCAG
CGGGCTACCAGCCCTAACGCTGGTGGGTTTACCAGAAACCACCGTCAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACGTTTCCAGCAAAGCGCATCACGGTCAATCTCGCCCCCGCAGACCTGCCAAAGGAAGGAGGACGC
TACGATCTGCCGATTGCTCTGGCGATTCTGGCGGCCTCAGAACAAATCGATGGTGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCGGCATTGGAAGCCATAAAAGCAGGCC
GTCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACATTGATACCGCAGGGTGAAGCGCTGATGGCCGGGCATTTA
TTGGACGTGTGTGCTTTTCTCAGTGGAGAAGAGGAATTGCTCAGTTGCTCCGACATGACGCCGGTTCCACAGATCGGGGA
AGATGCGCTCGATCTGAAGGATATCATCGGTCAGGAGCAAGCTAAACGCGCGTTGGAAATCGCGGCGGCAGGCGGTCACA
ATCTGCTTTTGCTAGGACCTCCGGGAACAGGGAAAACCATGCTGGCGAGTCGATTAGGCAATCTGATGCCGCCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAATAGCCTAATCAACATTGATGCCACCATGACGCGCTGGCGAGAAAGACC
ATTCAGAGCACCTCATCATAGCTCTTCCATGGCTGCACTCGTGGGCGGAGGGTCACTGCCCAAACCCGGAGAAATCTCGC
TCGCCCACAACGGCGTACTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTACTGGACTCACTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGCACTCGGGCCAAAGTGTGCTACCCAGCACGGGTGCAACTCGTCGCCGCAATGAA
TCCCAGCCCGTCAGGCCACTATCAGGGCATTCATAACCGATTACCCGCACAGCAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCTATCGAAGTCCCTTTGCTACCACCAGGGGTTTTATCTCAGCAGCATTAC
CAAGGCGAAAGCAGCGCGACAATTCGTGAGCGCGTGCTGACCGCACGGCAGATACAACTGAAGCGGGCAAATAAAATCAA
CGCACTGCTCACGTCACGCGAAATAGAAAAACACTGCGGATTGGAGATGGCTGATGCGACCTATTTGGAAGAGGTGATGA
ACAAACTTGGCTTATCCGTACGTGCGTGGCACAGGATATTGAAAGTTGCGCGCACGATCGCTGACCTCGGCGATCGGGAC
AACATAGAGAGAAAACACCTTGCCGAAGCGCTGAGCTATCGCTGTATGGATCGATTGCTCATCCAGCTCCACAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.032

99.606

0.638
  comM Vibrio cholerae strain A1552

64.016

99.016

0.634
  comM Glaesserella parasuis strain SC1401

63.261

100

0.634
  comM Vibrio campbellii strain DS40M4

62.648

99.606

0.624
  comM Legionella pneumophila str. Paris

50.701

98.228

0.498
  comM Legionella pneumophila strain ERS1305867

50.701

98.228

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.304

100

0.469

Multiple sequence alignment