Detailed information NTG0403070

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HU676_RS04995
• Genome accession: NZ_CP055259
• Coordinates: 1038568..1039560 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AH62
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1033568..1044560

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU676_RS04965 (HU676_04965)	ispD	1033629..1034339 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HU676_RS04970 (HU676_04970)	ispF	1034339..1034818 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HU676_RS04975 (HU676_04975)	truD	1034815..1035864 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
HU676_RS04980 (HU676_04980)	surE	1035845..1036606 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
HU676_RS04985 (HU676_04985)	pcm	1036600..1037226 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
HU676_RS04990 (HU676_04990)	nlpD	1037411..1038505 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
HU676_RS04995 (HU676_04995)	rpoS	1038568..1039560 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
HU676_RS05000 (HU676_05000)	ygbN	1039654..1041018 (-)	1365	WP_000104429.1	GntP family transporter	-
HU676_RS05005 (HU676_05005)	ygbM	1041107..1041883 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
HU676_RS05010 (HU676_05010)	ygbL	1041888..1042526 (-)	639	WP_001278994.1	aldolase	-
HU676_RS05015 (HU676_05015)	otnK	1042523..1043785 (-)	1263	WP_176256467.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=403070 HU676_RS04995 WP_000081550.1 1038568..1039560(+) (rpoS) [Escherichia coli strain AH62]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=403070 HU676_RS04995 WP_000081550.1 1038568..1039560(+) (rpoS) [Escherichia coli strain AH62]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715