Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   HUT19_RS07445 Genome accession   NZ_CP054916
Coordinates   1822218..1822838 (+) Length   206 a.a.
NCBI ID   WP_176179697.1    Uniprot ID   -
Organism   Streptomyces sp. NA02950     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1817218..1827838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUT19_RS07425 (HUT19_07425) - 1818441..1819097 (-) 657 WP_176179693.1 vitamin K epoxide reductase family protein -
  HUT19_RS07430 (HUT19_07430) - 1819281..1820159 (+) 879 WP_176179694.1 ABC transporter ATP-binding protein -
  HUT19_RS07435 (HUT19_07435) - 1820156..1820995 (+) 840 WP_176179695.1 ABC transporter permease -
  HUT19_RS07440 (HUT19_07440) - 1820953..1822221 (+) 1269 WP_176179696.1 sensor histidine kinase -
  HUT19_RS07445 (HUT19_07445) vraR 1822218..1822838 (+) 621 WP_176179697.1 response regulator transcription factor Regulator
  HUT19_RS07450 (HUT19_07450) hisS 1822892..1824154 (-) 1263 WP_176179698.1 histidine--tRNA ligase -
  HUT19_RS07455 (HUT19_07455) - 1824168..1824884 (-) 717 WP_176179699.1 MBL fold metallo-hydrolase -
  HUT19_RS07460 (HUT19_07460) - 1825029..1825892 (+) 864 WP_176179700.1 peptidylprolyl isomerase -
  HUT19_RS07465 (HUT19_07465) - 1826101..1827330 (+) 1230 WP_176179701.1 DUF349 domain-containing protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21978.35 Da        Isoelectric Point: 5.4117

>NTDB_id=401995 HUT19_RS07445 WP_176179697.1 1822218..1822838(+) (vraR) [Streptomyces sp. NA02950]
MIRILIADDHPVVREGLRGMLGAEPGLEVVGEAANGPRAEALSASLLPDVVLMDLRMPDGDGVDSIARMTAAGLPCRVIV
LTTYETDGDILRAVEAGAAGYLLKDTARADLAEAVRSAARGETVLTPSVAARLVDRLRDRPERPRLSERETAVLRLVAEG
CTNAEIGRRLYIGESTVKTHLLRAFTKLGVDDRTAAVTSAMRLGLL

Nucleotide


Download         Length: 621 bp        

>NTDB_id=401995 HUT19_RS07445 WP_176179697.1 1822218..1822838(+) (vraR) [Streptomyces sp. NA02950]
GTGATCCGGATACTGATCGCGGACGACCACCCGGTGGTGCGCGAGGGGCTGCGCGGCATGCTCGGCGCCGAGCCCGGTCT
TGAGGTCGTCGGCGAGGCGGCCAACGGACCGCGTGCGGAGGCGCTGAGCGCCTCGCTGCTGCCCGATGTGGTGCTGATGG
ACCTGCGGATGCCGGACGGCGACGGGGTGGACTCGATCGCCCGGATGACCGCAGCCGGACTGCCCTGCCGGGTGATCGTC
CTGACCACGTACGAGACGGACGGCGACATCCTGCGCGCGGTGGAGGCCGGGGCGGCGGGCTATCTCCTCAAGGACACGGC
CCGCGCCGACCTGGCCGAGGCGGTCCGGTCGGCCGCCCGCGGGGAGACGGTGCTGACTCCGTCCGTCGCGGCCCGGCTGG
TGGACCGGCTCCGGGACCGGCCCGAGCGGCCCCGGCTGTCGGAGCGCGAGACGGCCGTGCTGCGACTGGTCGCGGAGGGC
TGTACCAACGCGGAGATCGGCCGTCGGCTGTACATCGGTGAGTCCACGGTGAAGACGCATCTGCTGCGGGCCTTCACCAA
GCTGGGCGTGGACGACCGTACGGCCGCGGTCACCAGCGCGATGCGGCTGGGGCTGCTGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-200)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.291

100

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

35.874

100

0.388

Multiple sequence alignment