Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | D3800_RS16055 | Genome accession | NZ_CP046058 |
| Coordinates | 3435113..3436219 (-) | Length | 368 a.a. |
| NCBI ID | WP_103111796.1 | Uniprot ID | - |
| Organism | Microcystis aeruginosa NIES-298 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3430113..3441219
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D3800_RS16045 (D3800_16045) | - | 3430966..3433536 (+) | 2571 | WP_103111794.1 | TIGR03960 family B12-binding radical SAM protein | - |
| D3800_RS16050 (D3800_16050) | - | 3433757..3434971 (-) | 1215 | WP_103111795.1 | type II secretion system F family protein | - |
| D3800_RS16055 (D3800_16055) | pilT | 3435113..3436219 (-) | 1107 | WP_103111796.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| D3800_RS16060 (D3800_16060) | pilB/pilB1 | 3436365..3438380 (-) | 2016 | WP_002778011.1 | GspE/PulE family protein | Machinery gene |
| D3800_RS16065 (D3800_16065) | grpE | 3438621..3439343 (+) | 723 | WP_002738986.1 | nucleotide exchange factor GrpE | - |
| D3800_RS16070 (D3800_16070) | - | 3439438..3440079 (-) | 642 | WP_103111797.1 | HAD-IA family hydrolase | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 40653.87 Da Isoelectric Point: 6.9681
>NTDB_id=400762 D3800_RS16055 WP_103111796.1 3435113..3436219(-) (pilT) [Microcystis aeruginosa NIES-298]
MELMIEDLMEQLVEMGGSDMHIQSGAPVYFRISGKLSPINEESLTPQDCQKLIFSMLNNTQRKELEQNWELDCSYGVKGL
ARFRINVYKERGAYAACLRALSSKMPNFEQLNLPEVIRELSERPRGLILVTGQTGSGKTTTLAAILDLINRTRSEHILTV
EDPIEYVFPNIKSLFHQRQKGEDTKSFANALRAALREDPDIILVGEMRDLETISLAITAAETGHLVFGTLHTSSAAGTVD
RIIDVFPANQQAQIRAMLSNSLLAVFSQNLVKKKNPKPGEFGRTMVQEIMVVTPAIANLIREGKAPQVYSAIQTGMKLGM
QTMEQGLANLVVSGVISFEEAISKSSKPDELQRLVAGSVANAKTKARF
MELMIEDLMEQLVEMGGSDMHIQSGAPVYFRISGKLSPINEESLTPQDCQKLIFSMLNNTQRKELEQNWELDCSYGVKGL
ARFRINVYKERGAYAACLRALSSKMPNFEQLNLPEVIRELSERPRGLILVTGQTGSGKTTTLAAILDLINRTRSEHILTV
EDPIEYVFPNIKSLFHQRQKGEDTKSFANALRAALREDPDIILVGEMRDLETISLAITAAETGHLVFGTLHTSSAAGTVD
RIIDVFPANQQAQIRAMLSNSLLAVFSQNLVKKKNPKPGEFGRTMVQEIMVVTPAIANLIREGKAPQVYSAIQTGMKLGM
QTMEQGLANLVVSGVISFEEAISKSSKPDELQRLVAGSVANAKTKARF
Nucleotide
Download Length: 1107 bp
>NTDB_id=400762 D3800_RS16055 WP_103111796.1 3435113..3436219(-) (pilT) [Microcystis aeruginosa NIES-298]
ATGGAATTAATGATCGAAGATTTAATGGAACAATTGGTCGAGATGGGCGGTTCCGATATGCACATTCAGTCTGGGGCGCC
GGTCTATTTTCGCATTAGTGGCAAACTGTCCCCGATTAATGAAGAATCTTTAACCCCGCAAGATTGTCAGAAATTGATTT
TTAGTATGCTCAATAATACCCAAAGAAAAGAGTTAGAGCAGAATTGGGAATTAGACTGTTCCTACGGGGTGAAAGGATTA
GCAAGATTTAGGATAAATGTTTATAAAGAAAGGGGAGCCTATGCAGCTTGTTTACGCGCTTTGTCCTCTAAAATGCCTAA
CTTTGAACAATTAAATTTACCAGAAGTGATCCGAGAATTATCGGAAAGACCGAGGGGATTAATTCTCGTAACTGGCCAAA
CAGGTTCAGGTAAAACTACCACTTTAGCGGCAATTTTAGACTTAATTAATCGGACTAGGTCTGAACATATTTTAACTGTA
GAAGACCCAATTGAATACGTTTTTCCTAATATAAAAAGCCTGTTTCACCAACGACAAAAAGGAGAAGATACCAAGAGTTT
TGCTAACGCACTAAGAGCAGCTTTACGGGAAGATCCTGATATTATCCTTGTGGGAGAAATGCGGGATTTAGAAACAATTA
GTTTGGCAATCACGGCGGCGGAAACCGGTCACTTAGTCTTCGGAACCCTACACACTAGCTCGGCAGCGGGAACAGTGGAT
CGGATTATTGACGTTTTCCCCGCTAACCAACAGGCACAAATTCGCGCCATGTTATCCAATTCTTTACTAGCAGTTTTTAG
TCAAAACCTAGTCAAGAAAAAAAATCCCAAACCGGGGGAATTTGGACGGACAATGGTACAGGAAATCATGGTGGTAACTC
CAGCGATCGCTAACCTAATTCGCGAAGGAAAAGCCCCCCAAGTTTACTCGGCAATTCAAACGGGAATGAAGCTAGGAATG
CAAACTATGGAACAGGGATTAGCTAATTTAGTTGTTAGCGGTGTTATATCCTTTGAAGAGGCAATTTCTAAAAGTAGTAA
ACCCGATGAATTACAACGTCTGGTCGCTGGGTCCGTTGCTAACGCCAAAACTAAAGCCCGTTTCTAA
ATGGAATTAATGATCGAAGATTTAATGGAACAATTGGTCGAGATGGGCGGTTCCGATATGCACATTCAGTCTGGGGCGCC
GGTCTATTTTCGCATTAGTGGCAAACTGTCCCCGATTAATGAAGAATCTTTAACCCCGCAAGATTGTCAGAAATTGATTT
TTAGTATGCTCAATAATACCCAAAGAAAAGAGTTAGAGCAGAATTGGGAATTAGACTGTTCCTACGGGGTGAAAGGATTA
GCAAGATTTAGGATAAATGTTTATAAAGAAAGGGGAGCCTATGCAGCTTGTTTACGCGCTTTGTCCTCTAAAATGCCTAA
CTTTGAACAATTAAATTTACCAGAAGTGATCCGAGAATTATCGGAAAGACCGAGGGGATTAATTCTCGTAACTGGCCAAA
CAGGTTCAGGTAAAACTACCACTTTAGCGGCAATTTTAGACTTAATTAATCGGACTAGGTCTGAACATATTTTAACTGTA
GAAGACCCAATTGAATACGTTTTTCCTAATATAAAAAGCCTGTTTCACCAACGACAAAAAGGAGAAGATACCAAGAGTTT
TGCTAACGCACTAAGAGCAGCTTTACGGGAAGATCCTGATATTATCCTTGTGGGAGAAATGCGGGATTTAGAAACAATTA
GTTTGGCAATCACGGCGGCGGAAACCGGTCACTTAGTCTTCGGAACCCTACACACTAGCTCGGCAGCGGGAACAGTGGAT
CGGATTATTGACGTTTTCCCCGCTAACCAACAGGCACAAATTCGCGCCATGTTATCCAATTCTTTACTAGCAGTTTTTAG
TCAAAACCTAGTCAAGAAAAAAAATCCCAAACCGGGGGAATTTGGACGGACAATGGTACAGGAAATCATGGTGGTAACTC
CAGCGATCGCTAACCTAATTCGCGAAGGAAAAGCCCCCCAAGTTTACTCGGCAATTCAAACGGGAATGAAGCTAGGAATG
CAAACTATGGAACAGGGATTAGCTAATTTAGTTGTTAGCGGTGTTATATCCTTTGAAGAGGCAATTTCTAAAAGTAGTAA
ACCCGATGAATTACAACGTCTGGTCGCTGGGTCCGTTGCTAACGCCAAAACTAAAGCCCGTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Legionella pneumophila strain ERS1305867 |
52.174 |
93.75 |
0.489 |
| pilT | Legionella pneumophila strain Lp02 |
52.174 |
93.75 |
0.489 |
| pilT | Pseudomonas aeruginosa PAK |
51.873 |
94.293 |
0.489 |
| pilT | Acinetobacter nosocomialis M2 |
51.009 |
94.293 |
0.481 |
| pilT | Acinetobacter baumannii strain A118 |
51.009 |
94.293 |
0.481 |
| pilT | Pseudomonas stutzeri DSM 10701 |
51.009 |
94.293 |
0.481 |
| pilT | Acinetobacter baumannii D1279779 |
51.009 |
94.293 |
0.481 |
| pilT | Acinetobacter baylyi ADP1 |
50.432 |
94.293 |
0.476 |
| pilT | Vibrio cholerae strain A1552 |
50.294 |
92.391 |
0.465 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
50.294 |
92.391 |
0.465 |
| pilT | Neisseria meningitidis 8013 |
49.558 |
92.12 |
0.457 |
| pilT | Neisseria gonorrhoeae MS11 |
49.263 |
92.12 |
0.454 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
45.429 |
95.109 |
0.432 |
| pilU | Vibrio cholerae strain A1552 |
37.64 |
96.739 |
0.364 |
| pilU | Pseudomonas stutzeri DSM 10701 |
37.892 |
95.38 |
0.361 |