Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   DEIPR_RS06635 Genome accession   NC_015161
Coordinates   1392885..1394090 (-) Length   401 a.a.
NCBI ID   WP_013615071.1    Uniprot ID   -
Organism   Deinococcus proteolyticus MRP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1387885..1399090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPR_RS06620 (Deipr_1310) clpP 1388323..1388928 (+) 606 WP_148231798.1 ATP-dependent Clp protease proteolytic subunit -
  DEIPR_RS06625 (Deipr_1311) clpX 1388925..1390139 (+) 1215 WP_013615069.1 ATP-dependent Clp protease ATP-binding subunit ClpX -
  DEIPR_RS06630 (Deipr_1312) lon 1390286..1392775 (+) 2490 WP_013615070.1 endopeptidase La -
  DEIPR_RS06635 (Deipr_1313) pilT 1392885..1394090 (-) 1206 WP_013615071.1 type IV pilus twitching motility protein PilT Machinery gene
  DEIPR_RS06640 (Deipr_1314) pilB 1394123..1396765 (-) 2643 WP_013615072.1 type II/IV secretion system protein Machinery gene
  DEIPR_RS06645 (Deipr_1315) - 1396841..1397383 (-) 543 WP_049775247.1 YqeG family HAD IIIA-type phosphatase -
  DEIPR_RS06650 (Deipr_1316) - 1397389..1398147 (-) 759 WP_013615074.1 polyphenol oxidase family protein -
  DEIPR_RS06655 (Deipr_1317) - 1398286..1399083 (+) 798 WP_013615075.1 enoyl-ACP reductase -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 44139.32 Da        Isoelectric Point: 6.6712

>NTDB_id=39919 DEIPR_RS06635 WP_013615071.1 1392885..1394090(-) (pilT) [Deinococcus proteolyticus MRP]
MTQLGPDITDILKYAAENDASDVILTVGLPPQFKLQGRYEVHEDYAALKPVDTRKLMYSMMNEKQQRTFEERRELDFSFA
LGDKARFRVNAFMQRGNVGGVMRLIPTKVRTVQEMGLPQNVIDIANAPRGLVLVTGPTGSGKSTTLAAMIDHINATKRLH
IVTIEDPIEFMHDHKQSIINQREVHADTMSFENALRASLRQAPDVILVGEMRDYETIKAAVTAAETGHLVMGTLHTNSAP
ESIDRIVDVFPEEQQEQIRVQLANNLVAIMTQQLLPRADGPGRILAYELLIANPAIRALIREGKTYQIVSSMQTGTREGM
VTMDAYLAQLYHRGIISFDIGKERAVDSKEFERLAKDKSGDVGGHMPSATAYAGAAAQQSTYGRGTGPAAPAGDGKTYGR
S

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=39919 DEIPR_RS06635 WP_013615071.1 1392885..1394090(-) (pilT) [Deinococcus proteolyticus MRP]
ATGACCCAGCTTGGACCCGATATCACCGACATCCTCAAGTACGCCGCCGAGAATGACGCTTCCGACGTGATTCTGACCGT
GGGCCTGCCGCCGCAGTTCAAGCTGCAGGGCCGCTACGAAGTCCACGAGGATTACGCTGCGCTCAAGCCGGTAGACACCC
GCAAGCTGATGTATTCCATGATGAACGAGAAGCAGCAGCGCACGTTTGAAGAGCGCCGTGAGCTGGACTTCAGCTTTGCG
CTGGGCGACAAGGCCCGCTTCCGTGTGAACGCCTTTATGCAGCGCGGCAACGTGGGCGGCGTGATGCGTCTGATTCCCAC
CAAGGTCCGCACGGTGCAGGAAATGGGCCTGCCGCAAAACGTCATCGACATCGCCAACGCGCCGCGTGGACTGGTGCTGG
TGACCGGCCCGACCGGCTCGGGTAAGTCCACCACCCTGGCGGCCATGATTGACCACATCAACGCCACCAAGCGGCTGCAC
ATCGTGACCATCGAAGACCCGATCGAGTTCATGCACGACCACAAGCAGAGCATCATCAATCAGCGCGAGGTGCATGCCGA
TACCATGAGCTTCGAGAACGCGCTGCGTGCCTCGCTGCGTCAGGCCCCCGACGTGATTCTGGTGGGCGAAATGCGTGACT
ACGAGACGATTAAAGCCGCCGTGACCGCCGCCGAAACGGGTCACCTGGTGATGGGCACCCTACACACCAACTCGGCCCCC
GAATCGATTGACCGTATCGTGGACGTGTTCCCCGAAGAGCAGCAGGAACAAATCCGCGTGCAGCTCGCCAACAACCTGGT
GGCGATCATGACCCAGCAGTTGCTGCCCCGTGCCGACGGCCCTGGCCGTATCCTGGCCTACGAACTCCTGATTGCCAACC
CCGCGATTCGGGCGCTGATTCGTGAAGGCAAGACCTACCAGATTGTCAGCTCCATGCAGACCGGCACCCGTGAGGGCATG
GTCACGATGGACGCTTACCTCGCCCAGCTCTATCACCGGGGCATCATCTCCTTCGATATCGGCAAGGAGCGTGCGGTGGA
CAGCAAAGAGTTCGAGCGCCTCGCCAAGGACAAGAGTGGTGACGTGGGCGGACACATGCCGAGTGCTACCGCTTACGCTG
GTGCAGCGGCGCAGCAGAGCACGTATGGCCGGGGAACAGGACCCGCCGCGCCTGCGGGTGACGGCAAAACCTATGGACGC
AGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

77.461

96.259

0.746
  pilT Pseudomonas stutzeri DSM 10701

52.464

86.035

0.451
  pilT Acinetobacter baylyi ADP1

52.312

86.284

0.451
  pilT Acinetobacter nosocomialis M2

53.916

82.793

0.446
  pilT Acinetobacter baumannii D1279779

53.916

82.793

0.446
  pilT Acinetobacter baumannii strain A118

53.916

82.793

0.446
  pilT Neisseria meningitidis 8013

51.289

87.032

0.446
  pilT Pseudomonas aeruginosa PAK

50.862

86.783

0.441
  pilT Neisseria gonorrhoeae MS11

51.014

86.035

0.439
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.755

82.544

0.419
  pilT Vibrio cholerae strain A1552

50.755

82.544

0.419
  pilT Legionella pneumophila strain Lp02

48.406

86.035

0.416
  pilT Legionella pneumophila strain ERS1305867

48.406

86.035

0.416
  pilU Pseudomonas stutzeri DSM 10701

42.5

89.776

0.382
  pilU Vibrio cholerae strain A1552

43.86

85.287

0.374

Multiple sequence alignment