Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HPE50_RS20725 Genome accession   NZ_CP054353
Coordinates   4189267..4190247 (-) Length   326 a.a.
NCBI ID   WP_001055632.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-172     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4184267..4195247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPE50_RS20695 (HPE50_20705) yggI 4184893..4185390 (+) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -
  HPE50_RS20700 (HPE50_20710) endA 4185485..4186192 (+) 708 WP_001571880.1 deoxyribonuclease I -
  HPE50_RS20705 (HPE50_20715) rsmE 4186272..4187003 (+) 732 WP_001300912.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  HPE50_RS20710 (HPE50_20720) gshB 4187016..4187966 (+) 951 WP_000593273.1 glutathione synthase -
  HPE50_RS20715 (HPE50_20725) yqgE 4188075..4188638 (+) 564 WP_001053178.1 YqgE/AlgH family protein -
  HPE50_RS20720 (HPE50_20730) ruvX 4188638..4189054 (+) 417 WP_000017106.1 Holliday junction resolvase RuvX -
  HPE50_RS20725 (HPE50_20735) pilT 4189267..4190247 (-) 981 WP_001055632.1 type IV pilus twitching motility protein PilT Machinery gene
  HPE50_RS20730 (HPE50_20740) yggS 4190265..4190969 (+) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  HPE50_RS20735 (HPE50_20745) yggT 4190987..4191553 (+) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  HPE50_RS20740 (HPE50_20750) yggU 4191550..4191840 (+) 291 WP_001277222.1 DUF167 family protein YggU -
  HPE50_RS20745 (HPE50_20755) rdgB 4191848..4192441 (+) 594 WP_001174738.1 XTP/dITP diphosphatase -
  HPE50_RS20750 (HPE50_20760) hemW 4192434..4193570 (+) 1137 WP_000239986.1 radical SAM family heme chaperone HemW -
  HPE50_RS20755 (HPE50_20765) - 4193883..4194869 (+) 987 WP_000784004.1 TRAP transporter substrate-binding protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36000.25 Da        Isoelectric Point: 5.7980

>NTDB_id=398989 HPE50_RS20725 WP_001055632.1 4189267..4190247(-) (pilT) [Escherichia coli strain SCU-172]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAVPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPLILPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=398989 HPE50_RS20725 WP_001055632.1 4189267..4190247(-) (pilT) [Escherichia coli strain SCU-172]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGCGAATGGAAGCTGTGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGG
TGCGCCACTGATATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGTGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTTAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTTGAA
TATCTTTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAAATTGGTTTGCACTGTATGACGTTCGCATCGGGATTGCG
GGCCGCATTGCGGGAAGATCCCGATGTGATTTTGCTCGGAGAGCTGCGTGACAGCGAGACAATCCGTCTGGCGCTGACGG
CAGCAGAAACCGGACACCTGGTGCTGGCAACTTTACATACGCGTGGTGCGGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTACGTAATCAACTGGCGGGTAGTTTACGGGCAGTGCTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACTCCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTGCCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGTTAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGACGTTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(63-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.765

100

0.509
  pilT Vibrio cholerae strain A1552

50.765

100

0.509
  pilT Neisseria meningitidis 8013

49.085

100

0.494
  pilT Neisseria gonorrhoeae MS11

48.78

100

0.491
  pilT Acinetobacter baylyi ADP1

47.095

100

0.472
  pilT Acinetobacter baumannii strain A118

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.789

100

0.469
  pilT Acinetobacter nosocomialis M2

46.789

100

0.469
  pilT Pseudomonas stutzeri DSM 10701

46.177

100

0.463
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

40.379

97.239

0.393
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilU Acinetobacter baylyi ADP1

36.957

98.773

0.365