Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   PSESU_RS12380 Genome accession   NC_014924
Coordinates   2708192..2709322 (+) Length   376 a.a.
NCBI ID   WP_013536126.1    Uniprot ID   E6WW91
Organism   Pseudoxanthomonas suwonensis 11-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2703192..2714322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSESU_RS12355 (Psesu_2462) - 2703355..2704539 (-) 1185 WP_013536121.1 cystathionine gamma-synthase -
  PSESU_RS12360 (Psesu_2463) - 2704633..2706009 (-) 1377 WP_013536122.1 pyridoxal-phosphate dependent enzyme -
  PSESU_RS12365 (Psesu_2464) - 2706185..2706400 (-) 216 WP_013536123.1 YdcH family protein -
  PSESU_RS12370 (Psesu_2465) - 2706792..2707691 (-) 900 WP_013536124.1 OmpA family protein -
  PSESU_RS12375 (Psesu_2466) - 2707688..2708089 (-) 402 WP_013536125.1 DUF4398 domain-containing protein -
  PSESU_RS12380 (Psesu_2467) pilU 2708192..2709322 (+) 1131 WP_013536126.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  PSESU_RS12385 (Psesu_2468) maiA 2709383..2710045 (-) 663 WP_013536127.1 maleylacetoacetate isomerase -
  PSESU_RS12390 (Psesu_2469) - 2710089..2711081 (-) 993 WP_013536128.1 fumarylacetoacetate hydrolase family protein -
  PSESU_RS12395 (Psesu_2470) - 2711430..2712821 (+) 1392 WP_013536129.1 DEAD/DEAH box helicase -
  PSESU_RS12400 (Psesu_2471) queD 2712953..2713306 (+) 354 WP_013536130.1 6-carboxytetrahydropterin synthase QueD -
  PSESU_RS12405 (Psesu_2472) - 2713515..2713898 (+) 384 WP_013536131.1 phasin family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41504.84 Da        Isoelectric Point: 6.1376

>NTDB_id=39495 PSESU_RS12380 WP_013536126.1 2708192..2709322(+) (pilU) [Pseudoxanthomonas suwonensis 11-1]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERDLELNMAIAVNDAGR
FRVNVFKQRGEVGMVIRAIRSTIPSIEELNLPEVLKDIIMTPRGLVLIVGSTGSGKSTSLASMIDYRNSNMTGHILTIED
PIEYLHKHKKSIVNQREVGLDTHAFHNALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVVSLRLVKGVDGRRLPATEVLLNTPMIRDLLRRGQVHEIKAAMEGSLEEGMQTFDQCL
FRMVKQGRIDQEEALRAADSRDGLALKFRLSEGAEGEHDPYADLNQAAGGISHGFG

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=39495 PSESU_RS12380 WP_013536126.1 2708192..2709322(+) (pilU) [Pseudoxanthomonas suwonensis 11-1]
ATGGATATCGGCTACTTCCTGAAGCTGATGACCGAGAAGAATGCCTCGGACATGTTCCTGACCACCGGGGCGCCGGTCTA
TATCAAGATCGAGGGGAAGCTCTATCCGCTCGGCAATACCGGCCTGCCGCCGGGCATGGTCAAGAAGATCGCGTATTCGT
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGACCTCGAGCTCAACATGGCCATCGCCGTGAACGACGCCGGCCGC
TTCCGCGTCAACGTGTTCAAGCAGCGCGGCGAAGTGGGCATGGTGATCCGCGCCATCCGCAGCACCATCCCCTCGATCGA
GGAGCTGAACCTGCCGGAGGTCCTGAAGGACATCATCATGACCCCGCGCGGCCTGGTCCTGATCGTCGGCTCGACCGGCT
CGGGCAAGTCGACCTCGCTGGCGTCGATGATCGACTACCGCAACAGCAACATGACCGGCCACATCCTCACGATCGAGGAC
CCGATCGAGTACCTGCACAAGCACAAGAAGTCGATCGTCAACCAGCGCGAGGTCGGCCTGGACACCCATGCCTTCCACAA
CGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTCGACGCCGAGACCATGGAGGCGG
CGATCGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCGACGCTGCACTCCAACAACGCCGACCAGACCATCGAGCGCATC
CTCAACTTCTTCCCCGAGAGCGCGCACAAGAACGTGCTGATGAACCTGGCCCTGAACCTGCGCGCGGTTGTTTCGCTGCG
CCTGGTCAAGGGCGTGGACGGGCGCCGCCTGCCGGCGACCGAGGTCCTGCTCAACACGCCGATGATCCGCGACCTGCTGC
GCCGCGGCCAGGTGCACGAGATCAAGGCGGCGATGGAAGGTTCGCTGGAGGAAGGCATGCAGACCTTCGACCAGTGCCTG
TTCCGGATGGTCAAGCAGGGCCGCATCGACCAGGAGGAGGCGCTGCGCGCGGCCGACTCGCGCGACGGCCTGGCCCTGAA
GTTCCGCCTGTCCGAGGGCGCCGAGGGCGAGCACGACCCCTACGCCGACCTCAACCAGGCCGCCGGCGGCATCAGCCACG
GCTTCGGCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(75-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E6WW91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.368

95.479

0.5
  pilU Vibrio cholerae strain A1552

49.435

94.149

0.465
  pilU Acinetobacter baylyi ADP1

48.876

94.681

0.463
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.251

95.213

0.431
  pilT Pseudomonas aeruginosa PAK

42.604

89.894

0.383
  pilT Acinetobacter nosocomialis M2

41.716

89.894

0.375
  pilT Acinetobacter baumannii D1279779

41.716

89.894

0.375
  pilT Acinetobacter baumannii strain A118

41.716

89.894

0.375
  pilT Pseudomonas stutzeri DSM 10701

41.716

89.894

0.375
  pilT Legionella pneumophila strain Lp02

41.42

89.894

0.372
  pilT Legionella pneumophila strain ERS1305867

41.42

89.894

0.372
  pilT Acinetobacter baylyi ADP1

41.176

90.426

0.372
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.742

88.564

0.37
  pilT Vibrio cholerae strain A1552

41.742

88.564

0.37
  pilT Neisseria gonorrhoeae MS11

39.481

92.287

0.364
  pilT Neisseria meningitidis 8013

39.481

92.287

0.364

Multiple sequence alignment