Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | GCB94_RS04035 | Genome accession | NZ_CP045306 |
| Coordinates | 645487..646599 (+) | Length | 370 a.a. |
| NCBI ID | WP_003632959.1 | Uniprot ID | D3HPT8 |
| Organism | Legionella longbeachae strain B1445CHC | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 640487..651599
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCB94_RS04015 (GCB94_03995) | - | 641189..641980 (-) | 792 | WP_003632966.1 | LirA/MavJ family T4SS effector | - |
| GCB94_RS04020 (GCB94_04000) | - | 642203..643084 (-) | 882 | WP_003632965.1 | polyprenyl synthetase family protein | - |
| GCB94_RS04025 (GCB94_04005) | - | 643077..643295 (-) | 219 | WP_003632964.1 | exodeoxyribonuclease VII small subunit | - |
| GCB94_RS04030 (GCB94_04010) | radA | 643471..644823 (+) | 1353 | WP_003632963.1 | DNA repair protein RadA | - |
| GCB94_RS04035 (GCB94_04015) | pilU | 645487..646599 (+) | 1113 | WP_003632959.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| GCB94_RS04040 (GCB94_04020) | ankK | 646658..648574 (+) | 1917 | WP_003632957.1 | Dot/Icm T4SS effector AnkK/LegA5 | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 41489.97 Da Isoelectric Point: 5.6701
>NTDB_id=393301 GCB94_RS04035 WP_003632959.1 645487..646599(+) (pilU) [Legionella longbeachae strain B1445CHC]
MDITPFFKLMVDKSASDLFFSVGAPPNIKIEGVIFPIGHVPLKSQQMAEIALSLMNDDQRKEFDATMELNMGLSIPEVGR
FRINLFRQRGDISMVVRYIKNKIPSIEQLNLPPILKSIVMELRGLVLVVGATGSGKSTTLAAMIDYRNQNQSGHILTIED
PIEFLHQHKKSIVDQREVGIDTMSYDNALVNAMREAPDVILIGEIRERNAMKHAIAYAETGHLCISTLHANNANQAMDRI
INFFTEDARKQVLLDLSLNLRAIISMRLIPGVSQQRMVAVEILLNTPYVADLIEKGKIDEIKEVMERSTEQGMQTFDQAL
LKLYKNGLISQENAIKYADSKNNVGLQIRLTSGKNFDLPEGDLTIESDEH
MDITPFFKLMVDKSASDLFFSVGAPPNIKIEGVIFPIGHVPLKSQQMAEIALSLMNDDQRKEFDATMELNMGLSIPEVGR
FRINLFRQRGDISMVVRYIKNKIPSIEQLNLPPILKSIVMELRGLVLVVGATGSGKSTTLAAMIDYRNQNQSGHILTIED
PIEFLHQHKKSIVDQREVGIDTMSYDNALVNAMREAPDVILIGEIRERNAMKHAIAYAETGHLCISTLHANNANQAMDRI
INFFTEDARKQVLLDLSLNLRAIISMRLIPGVSQQRMVAVEILLNTPYVADLIEKGKIDEIKEVMERSTEQGMQTFDQAL
LKLYKNGLISQENAIKYADSKNNVGLQIRLTSGKNFDLPEGDLTIESDEH
Nucleotide
Download Length: 1113 bp
>NTDB_id=393301 GCB94_RS04035 WP_003632959.1 645487..646599(+) (pilU) [Legionella longbeachae strain B1445CHC]
ATGGACATAACTCCTTTTTTTAAATTAATGGTAGATAAAAGTGCTTCAGACCTTTTTTTTAGTGTAGGAGCTCCTCCTAA
TATTAAAATTGAGGGAGTTATTTTTCCCATTGGCCATGTTCCGCTTAAATCACAACAAATGGCTGAAATTGCTTTGTCAT
TGATGAATGATGATCAGCGTAAAGAATTTGATGCCACAATGGAACTGAATATGGGGCTTTCCATTCCTGAAGTAGGGCGT
TTTAGGATTAATCTATTTCGCCAACGCGGTGATATCTCTATGGTTGTGCGTTATATTAAGAATAAAATTCCTTCCATAGA
ACAATTAAACTTACCACCTATTTTAAAGTCTATAGTCATGGAGCTACGTGGTTTAGTTTTAGTTGTCGGTGCGACTGGTT
CGGGGAAATCAACTACTCTCGCGGCAATGATTGATTATCGTAATCAGAATCAAAGTGGACATATTTTAACAATCGAGGAT
CCTATAGAGTTTCTCCACCAGCATAAAAAATCGATAGTAGATCAGCGTGAAGTAGGCATAGATACGATGAGTTACGATAA
TGCCTTAGTCAATGCAATGCGAGAGGCTCCGGATGTAATTTTAATCGGTGAAATTCGCGAGCGCAATGCCATGAAACATG
CAATTGCCTACGCAGAAACAGGGCATTTATGCATTTCCACTTTGCATGCGAATAATGCAAATCAAGCTATGGATCGGATC
ATTAATTTTTTTACCGAAGATGCAAGAAAGCAAGTACTTTTGGACTTATCACTGAATTTAAGAGCTATTATTTCCATGCG
TCTAATTCCTGGGGTAAGCCAGCAACGAATGGTTGCTGTAGAAATCTTATTAAATACACCTTATGTTGCTGATTTAATTG
AAAAAGGAAAAATTGATGAGATTAAGGAAGTTATGGAGCGTAGCACTGAACAGGGAATGCAGACTTTTGATCAGGCTTTA
TTGAAACTTTATAAAAATGGTTTGATTTCACAGGAAAATGCTATCAAATATGCTGATTCCAAAAATAATGTGGGCTTACA
AATTCGTTTGACGAGTGGTAAAAATTTTGACTTACCCGAGGGTGATTTAACCATAGAATCGGATGAGCATTGA
ATGGACATAACTCCTTTTTTTAAATTAATGGTAGATAAAAGTGCTTCAGACCTTTTTTTTAGTGTAGGAGCTCCTCCTAA
TATTAAAATTGAGGGAGTTATTTTTCCCATTGGCCATGTTCCGCTTAAATCACAACAAATGGCTGAAATTGCTTTGTCAT
TGATGAATGATGATCAGCGTAAAGAATTTGATGCCACAATGGAACTGAATATGGGGCTTTCCATTCCTGAAGTAGGGCGT
TTTAGGATTAATCTATTTCGCCAACGCGGTGATATCTCTATGGTTGTGCGTTATATTAAGAATAAAATTCCTTCCATAGA
ACAATTAAACTTACCACCTATTTTAAAGTCTATAGTCATGGAGCTACGTGGTTTAGTTTTAGTTGTCGGTGCGACTGGTT
CGGGGAAATCAACTACTCTCGCGGCAATGATTGATTATCGTAATCAGAATCAAAGTGGACATATTTTAACAATCGAGGAT
CCTATAGAGTTTCTCCACCAGCATAAAAAATCGATAGTAGATCAGCGTGAAGTAGGCATAGATACGATGAGTTACGATAA
TGCCTTAGTCAATGCAATGCGAGAGGCTCCGGATGTAATTTTAATCGGTGAAATTCGCGAGCGCAATGCCATGAAACATG
CAATTGCCTACGCAGAAACAGGGCATTTATGCATTTCCACTTTGCATGCGAATAATGCAAATCAAGCTATGGATCGGATC
ATTAATTTTTTTACCGAAGATGCAAGAAAGCAAGTACTTTTGGACTTATCACTGAATTTAAGAGCTATTATTTCCATGCG
TCTAATTCCTGGGGTAAGCCAGCAACGAATGGTTGCTGTAGAAATCTTATTAAATACACCTTATGTTGCTGATTTAATTG
AAAAAGGAAAAATTGATGAGATTAAGGAAGTTATGGAGCGTAGCACTGAACAGGGAATGCAGACTTTTGATCAGGCTTTA
TTGAAACTTTATAAAAATGGTTTGATTTCACAGGAAAATGCTATCAAATATGCTGATTCCAAAAATAATGTGGGCTTACA
AATTCGTTTGACGAGTGGTAAAAATTTTGACTTACCCGAGGGTGATTTAACCATAGAATCGGATGAGCATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
52.973 |
100 |
0.53 |
| pilU | Acinetobacter baylyi ADP1 |
52.381 |
96.486 |
0.505 |
| pilU | Vibrio cholerae strain A1552 |
47.619 |
96.486 |
0.459 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.363 |
91.622 |
0.397 |
| pilT | Legionella pneumophila strain ERS1305867 |
42.105 |
92.432 |
0.389 |
| pilT | Legionella pneumophila strain Lp02 |
42.105 |
92.432 |
0.389 |
| pilT | Pseudomonas aeruginosa PAK |
41.691 |
92.703 |
0.386 |
| pilT | Neisseria gonorrhoeae MS11 |
41.21 |
93.784 |
0.386 |
| pilT | Neisseria meningitidis 8013 |
41.21 |
93.784 |
0.386 |
| pilT | Pseudomonas stutzeri DSM 10701 |
40.816 |
92.703 |
0.378 |
| pilT | Vibrio cholerae strain A1552 |
41.566 |
89.73 |
0.373 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.566 |
89.73 |
0.373 |
| pilT | Acinetobacter baumannii strain A118 |
41.018 |
90.27 |
0.37 |
| pilT | Acinetobacter nosocomialis M2 |
41.018 |
90.27 |
0.37 |
| pilT | Acinetobacter baumannii D1279779 |
41.018 |
90.27 |
0.37 |
| pilT | Acinetobacter baylyi ADP1 |
39.706 |
91.892 |
0.365 |