Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NMBM04240196_RS07200 Genome accession   NC_017515
Coordinates   1382946..1383884 (-) Length   312 a.a.
NCBI ID   WP_014581479.1    Uniprot ID   -
Organism   Neisseria meningitidis M04-240196     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1377946..1388884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMBM04240196_RS07180 (NMBM04240196_1269) dut 1378301..1378753 (-) 453 WP_014581478.1 dUTP diphosphatase -
  NMBM04240196_RS07185 (NMBM04240196_1270) - 1378896..1379321 (+) 426 Protein_1316 AzlC family ABC transporter permease -
  NMBM04240196_RS07190 (NMBM04240196_1271) pilX 1381890..1382363 (-) 474 WP_002258079.1 PilX family type IV pilin Machinery gene
  NMBM04240196_RS07195 (NMBM04240196_1272) pilK 1382368..1382967 (-) 600 WP_002226439.1 pilus assembly protein Machinery gene
  NMBM04240196_RS07200 (NMBM04240196_1273) pilJ 1382946..1383884 (-) 939 WP_014581479.1 PilW family protein Machinery gene
  NMBM04240196_RS07205 (NMBM04240196_1274) pilV 1383881..1384501 (-) 621 WP_014581480.1 type IV pilus modification protein PilV Regulator
  NMBM04240196_RS07210 (NMBM04240196_1275) pilH 1384531..1385199 (-) 669 WP_014581481.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NMBM04240196_RS07215 (NMBM04240196_1276) dnaB 1385508..1386914 (-) 1407 WP_002219448.1 replicative DNA helicase -
  NMBM04240196_RS07220 (NMBM04240196_1277) - 1387076..1387663 (+) 588 WP_002223431.1 superoxide dismutase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34171.66 Da        Isoelectric Point: 8.4332

>NTDB_id=38902 NMBM04240196_RS07200 WP_014581479.1 1382946..1383884(-) (pilJ) [Neisseria meningitidis M04-240196]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAAQQDLRNAATLIVRDARMAGGFG
CFNMSEHSATDVIPDTTQQNSPFSLKRNGIDKLIPIAESSNIGYPDFTQRLNALIFQYGIDDVNASADTTVVSSCAKIAK
PGKKISTLQEAKSALQITNDDKQNGNITRQRHVVNAYAVGRIAGEEGLFRFQLNDNGQWGNPQLLVKKINKMDIRYIYVS
NCPEDDDAGKEETFKYTDKFNSAQNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=38902 NMBM04240196_RS07200 WP_014581479.1 1382946..1383884(-) (pilJ) [Neisseria meningitidis M04-240196]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTTACGTCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGCGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCGAGAATGGCGGGCGGCTTCGGT
TGTTTCAATATGTCCGAGCATTCTGCAACTGATGTTATTCCCGATACGACGCAACAAAATTCTCCTTTTTCCTTAAAAAG
GAACGGTATAGATAAACTTATTCCCATAGCGGAATCTTCAAATATCGGATATCCGGATTTTACCCAGCGCCTTAACGCAT
TGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTCGTCAGCAGCTGTGCCAAAATAGCAAAA
CCGGGTAAGAAAATATCTACCTTGCAAGAAGCAAAGAGTGCATTACAGATTACTAATGATGATAAACAAAATGGAAATAT
CACCCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGTTCCGCTTCCAATTGA
ATGATAATGGGCAGTGGGGTAATCCTCAGTTGTTGGTTAAAAAGATTAATAAAATGGATATACGGTATATTTATGTTTCC
AACTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAAATTCAACAGCGCCCAAAATGCTGT
TACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCGCTTCTTCAGACAATCATATTTATG
CTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

77.215

100

0.782

Multiple sequence alignment