Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   HHJ43_RS04365 Genome accession   NZ_CP051751
Coordinates   930719..931699 (+) Length   326 a.a.
NCBI ID   WP_001361345.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-301     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 925719..936699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ43_RS04335 (HHJ43_04340) - 926097..927083 (-) 987 WP_000784004.1 TRAP transporter substrate-binding protein -
  HHJ43_RS04340 (HHJ43_04345) hemW 927396..928532 (-) 1137 WP_000239986.1 radical SAM family heme chaperone HemW -
  HHJ43_RS04345 (HHJ43_04350) rdgB 928525..929118 (-) 594 WP_001174738.1 XTP/dITP diphosphatase -
  HHJ43_RS04350 (HHJ43_04355) yggU 929126..929416 (-) 291 WP_001277222.1 DUF167 family protein YggU -
  HHJ43_RS04355 (HHJ43_04360) yggT 929413..929979 (-) 567 WP_001094831.1 osmotic shock tolerance protein YggT -
  HHJ43_RS04360 (HHJ43_04365) yggS 929997..930701 (-) 705 WP_000997795.1 pyridoxal phosphate homeostasis protein -
  HHJ43_RS04365 (HHJ43_04370) pilT 930719..931699 (+) 981 WP_001361345.1 type IV pilus twitching motility protein PilT Machinery gene
  HHJ43_RS04370 (HHJ43_04375) ruvX 931908..932324 (-) 417 WP_000017106.1 Holliday junction resolvase RuvX -
  HHJ43_RS04375 (HHJ43_04380) yqgE 932324..932887 (-) 564 WP_001339287.1 YqgE/AlgH family protein -
  HHJ43_RS04380 (HHJ43_04385) gshB 932996..933946 (-) 951 WP_000593273.1 glutathione synthase -
  HHJ43_RS04385 (HHJ43_04390) rsmE 933959..934690 (-) 732 WP_001300912.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  HHJ43_RS04390 (HHJ43_04395) endA 934770..935477 (-) 708 WP_000286500.1 deoxyribonuclease I -
  HHJ43_RS04395 (HHJ43_04400) yggI 935572..936069 (-) 498 WP_000858396.1 SprT family zinc-dependent metalloprotease -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35970.18 Da        Isoelectric Point: 5.7980

>NTDB_id=387907 HHJ43_RS04365 WP_001361345.1 930719..931699(+) (pilT) [Escherichia coli strain SCU-301]
MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAVPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRG
SAFAQRQGISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMLTFQQSYQQR
VGEGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=387907 HHJ43_RS04365 WP_001361345.1 930719..931699(+) (pilT) [Escherichia coli strain SCU-301]
ATGAATATGGAAGAAATTGTGGCCCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGCAGCGCCTGGCCCGCACG
ATGGCGTATTCGCGGGCGAATGGAAGCTGTGCCGTTTGATGCGCCGGACGTCGAAGAGCTACTGCGGGAGTGGCTGGATG
ACGATCAGCGGGCAATATTGCTGGAGAATGGTCAGCTGGATTTTGCTGTGTCGCTGGCGGAAAACCAGCGGTTGCGTGGC
AGTGCGTTCGCGCAACGGCAAGGTATTTCTCTGGCATTACGGTTGTTACCTTCGCACTGTCCACAGCTCGAACAGCTTGG
TGCGCCACCGGTATTGCCGGAATTACTCAAGAGCGAGAATGGCCTGATTCTGGTGACGGGGGCGACGGGGAGCGGCAAAT
CTACCACGCTGGCGGCGATGGTTGGCTATCTCAATCAACATGCCGATGCGCATATTCTGACGCTGGAAGATCCTGTTGAA
TATCTCTATGCCAGCCAGCGATGTTTGATCCAGCAGCGGGAGATTGGTTTGCACTGTATGACGTTCGCATCGGGGTTGCG
GGCTGCATTGCGGGAAGATCCCGATGTGATTTTGCTCGGAGAGCTACGTGACAGCGAGACAATCCGTCTGGCGCTTACGG
CAGCAGAAACCGGACACCTGGTGCTGGCAACTTTACATACGCGTGGTGCGGCGCAGGCAGTTGAGCGACTGGTGGATTCA
TTTCCGGCGCAGGAAAAAGATCCCGTACGTAATCAACTGGCGGGTAGTTTACGGGCAGTGCTGTCACAAAAGCTGGAAGT
GGATAAACAGGAAGGACGCGTGGCGCTGTTTGAATTACTGATTAACACTCCCGCGGTGGGGAATTTGATTCGCGAAGGGA
AAACCCACCAGTTGCCGCATGTTATTCAAACCGGGCAGCAGGTGGGGATGTTAACGTTTCAGCAGAGTTATCAGCAGCGG
GTGGGGGAAGGGCGTTTGTGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(62-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

50.459

100

0.506
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

50.459

100

0.506
  pilT Neisseria meningitidis 8013

48.78

100

0.491
  pilT Neisseria gonorrhoeae MS11

48.476

100

0.488
  pilT Acinetobacter baylyi ADP1

46.789

100

0.469
  pilT Acinetobacter baumannii D1279779

46.483

100

0.466
  pilT Acinetobacter nosocomialis M2

46.483

100

0.466
  pilT Acinetobacter baumannii strain A118

46.483

100

0.466
  pilT Pseudomonas stutzeri DSM 10701

46.483

100

0.466
  pilT Pseudomonas aeruginosa PAK

46.177

100

0.463
  pilT Legionella pneumophila strain ERS1305867

45.26

100

0.454
  pilT Legionella pneumophila strain Lp02

45.26

100

0.454
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.138

97.546

0.411
  pilU Vibrio cholerae strain A1552

40.694

97.239

0.396
  pilU Pseudomonas stutzeri DSM 10701

37.576

100

0.38
  pilU Acinetobacter baylyi ADP1

37.267

98.773

0.368