Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   FHP22_RS11495 Genome accession   NZ_CP044018
Coordinates   2383349..2384386 (+) Length   345 a.a.
NCBI ID   WP_127800519.1    Uniprot ID   -
Organism   Acinetobacter indicus strain HY20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2378349..2389386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FHP22_RS11485 (FHP22_11485) - 2381396..2382493 (+) 1098 WP_127800523.1 acyltransferase family protein -
  FHP22_RS11490 (FHP22_11490) - 2382539..2383225 (-) 687 WP_127800521.1 YggS family pyridoxal phosphate-dependent enzyme -
  FHP22_RS11495 (FHP22_11495) pilT 2383349..2384386 (+) 1038 WP_127800519.1 type IV pilus twitching motility protein PilT Machinery gene
  FHP22_RS11500 (FHP22_11500) pilU 2384414..2385532 (+) 1119 WP_005179770.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  FHP22_RS11505 (FHP22_11505) fur 2385605..2386042 (-) 438 WP_005179771.1 ferric iron uptake transcriptional regulator -
  FHP22_RS11510 (FHP22_11510) - 2386155..2386553 (+) 399 WP_005179773.1 outer membrane protein assembly factor BamE -
  FHP22_RS11515 (FHP22_11515) - 2386596..2386919 (-) 324 WP_005179774.1 RnfH family protein -
  FHP22_RS11520 (FHP22_11520) - 2386919..2388001 (-) 1083 WP_127800517.1 hypothetical protein -
  FHP22_RS11525 (FHP22_11525) - 2388168..2388623 (-) 456 WP_005179777.1 bacteriohemerythrin -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38255.78 Da        Isoelectric Point: 6.5051

>NTDB_id=387072 FHP22_RS11495 WP_127800519.1 2383349..2384386(+) (pilT) [Acinetobacter indicus strain HY20]
MDITELLAFSAKNGASDLHLSAGMPPLIRVDGEVRRINLPALEHKEVHKLVYDIMNDKQRRDYEDNLETDFSFEVPGVAR
FRVNAFNQNRGAGAVFRTIPSKVLTIEDLGMGQIFRDICDYPRGLVLVTGPTGSGKSTTLAAMIDYINDNRYDHILTVED
PIEFVHQSKKCLVNQREVHRDTHGFNEALRSALREDPDIILVGEMRDLETIRLALTAAETGHLVFGTLHTTSAAKTIDRV
IDVFPAEEKDMVRAMLSESLQAVISQTLLKKNGGGRVAAHEIMIGIPAIRNLIRENKVAQMYSAIQTGANYGMSTMDQSL
KALVSRGVISPQTARTVAKQPESFL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=387072 FHP22_RS11495 WP_127800519.1 2383349..2384386(+) (pilT) [Acinetobacter indicus strain HY20]
ATGGATATTACAGAACTATTGGCCTTTTCGGCAAAAAATGGGGCATCGGATTTACACCTGTCGGCAGGCATGCCGCCACT
GATTCGTGTGGATGGTGAAGTACGCCGCATCAATTTGCCCGCCTTGGAACATAAAGAAGTCCACAAGCTGGTCTATGACA
TCATGAACGACAAACAGCGCCGTGATTATGAAGATAACCTGGAAACCGACTTCTCGTTTGAAGTCCCAGGCGTGGCGCGT
TTCCGTGTTAACGCATTTAACCAGAACCGCGGTGCAGGCGCGGTGTTTCGTACCATTCCCTCTAAAGTGCTGACCATTGA
AGATTTGGGAATGGGTCAAATCTTTAGAGATATCTGTGACTATCCACGTGGTCTAGTGCTGGTCACGGGGCCGACCGGTT
CGGGTAAATCCACCACCCTGGCGGCGATGATTGACTATATCAATGACAATCGCTATGACCACATCCTGACCGTGGAAGAC
CCGATTGAATTTGTGCATCAGTCTAAAAAATGTCTGGTCAACCAGCGTGAAGTGCATCGTGATACCCACGGCTTTAATGA
AGCACTACGTTCGGCGCTGCGTGAAGACCCGGATATTATTCTGGTCGGTGAGATGCGTGACCTGGAAACCATCCGTTTGG
CACTTACCGCGGCAGAAACCGGTCACCTGGTCTTTGGTACCCTGCATACCACCTCGGCGGCAAAAACCATTGACCGTGTG
ATTGACGTCTTTCCGGCCGAAGAAAAAGACATGGTACGTGCCATGCTGTCTGAATCGTTACAGGCGGTCATTTCCCAAAC
CCTGCTCAAGAAAAATGGCGGTGGCCGTGTGGCGGCGCATGAAATCATGATCGGGATTCCGGCCATCCGTAACCTGATTC
GTGAAAACAAGGTTGCGCAGATGTACTCAGCCATTCAAACCGGTGCCAACTACGGCATGAGTACGATGGACCAGAGTCTG
AAAGCCCTGGTCAGCCGTGGCGTGATCAGTCCGCAGACCGCACGTACGGTGGCAAAACAGCCAGAATCGTTCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Acinetobacter nosocomialis M2

94.493

100

0.945
  pilT Acinetobacter baumannii D1279779

94.203

100

0.942
  pilT Acinetobacter baumannii strain A118

94.203

100

0.942
  pilT Acinetobacter baylyi ADP1

86.628

99.71

0.864
  pilT Pseudomonas stutzeri DSM 10701

83.721

99.71

0.835
  pilT Pseudomonas aeruginosa PAK

83.43

99.71

0.832
  pilT Legionella pneumophila strain Lp02

73.837

99.71

0.736
  pilT Legionella pneumophila strain ERS1305867

73.837

99.71

0.736
  pilT Neisseria meningitidis 8013

68.406

100

0.684
  pilT Neisseria gonorrhoeae MS11

68.116

100

0.681
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

69.345

97.391

0.675
  pilT Vibrio cholerae strain A1552

69.345

97.391

0.675
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.174

100

0.522
  pilU Vibrio cholerae strain A1552

42.09

97.101

0.409
  pilU Pseudomonas stutzeri DSM 10701

41.194

97.101

0.4
  pilU Acinetobacter baylyi ADP1

37.861

100

0.38

Multiple sequence alignment