Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   F0U83_RS04595 Genome accession   NZ_CP043869
Coordinates   979630..980055 (+) Length   141 a.a.
NCBI ID   WP_138988748.1    Uniprot ID   A0A5P1R9S9
Organism   Neptunomonas concharum strain JCM17730     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 974630..985055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U83_RS04570 (F0U83_04570) - 974724..974942 (-) 219 WP_138988743.1 DNA gyrase inhibitor YacG -
  F0U83_RS04575 (F0U83_04575) coaE 974939..975553 (-) 615 WP_138988744.1 dephospho-CoA kinase -
  F0U83_RS04580 (F0U83_04580) pilD 975562..976428 (-) 867 WP_138988745.1 prepilin peptidase Machinery gene
  F0U83_RS04585 (F0U83_04585) pilC 976436..977659 (-) 1224 WP_138988746.1 type II secretion system F family protein Machinery gene
  F0U83_RS04590 (F0U83_04590) pilB 977678..979390 (-) 1713 WP_138988747.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F0U83_RS04595 (F0U83_04595) comP 979630..980055 (+) 426 WP_138988748.1 pilin Machinery gene
  F0U83_RS17215 (F0U83_04600) comP 980127..980564 (+) 438 WP_138988749.1 pilin Machinery gene
  F0U83_RS04605 (F0U83_04605) - 980580..980924 (+) 345 WP_138988750.1 hypothetical protein -
  F0U83_RS04610 (F0U83_04610) nadC 980970..981809 (-) 840 WP_138988751.1 carboxylating nicotinate-nucleotide diphosphorylase -
  F0U83_RS04615 (F0U83_04615) ampD 981899..982456 (+) 558 WP_246077868.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  F0U83_RS04620 (F0U83_04620) - 982525..983574 (+) 1050 WP_138988752.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 14136.27 Da        Isoelectric Point: 5.7134

>NTDB_id=386307 F0U83_RS04595 WP_138988748.1 979630..980055(+) (comP) [Neptunomonas concharum strain JCM17730]
MKKQQGFTLIELMIVVAIIGILAAIALPAYQDYTVRARVTEGLSLASGFKSTVGENIASNGGVIAAGSCAGVTDLGATGA
VASVTCADATGVIVATMDATGNNVPLTLTPTSAAGTPITWLCTTPAANHRYVPGECRNVAP

Nucleotide


Download         Length: 426 bp        

>NTDB_id=386307 F0U83_RS04595 WP_138988748.1 979630..980055(+) (comP) [Neptunomonas concharum strain JCM17730]
ATGAAAAAGCAACAAGGCTTTACATTGATTGAACTGATGATCGTAGTTGCGATTATCGGTATTTTGGCAGCTATCGCATT
GCCTGCTTATCAGGATTACACTGTTCGAGCCCGTGTAACAGAGGGGTTATCATTAGCAAGCGGTTTCAAATCTACAGTTG
GAGAAAATATTGCCTCAAATGGTGGGGTGATAGCAGCTGGTTCATGTGCGGGAGTAACTGACTTAGGTGCAACAGGTGCA
GTGGCATCTGTAACCTGTGCAGACGCTACAGGTGTAATTGTTGCAACTATGGATGCTACAGGTAACAACGTACCTTTGAC
TTTGACGCCAACTTCAGCTGCTGGTACTCCTATTACTTGGCTTTGTACTACACCAGCTGCAAATCACCGGTATGTTCCTG
GTGAATGTCGTAATGTAGCTCCTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1R9S9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

54.73

100

0.574
  pilA Ralstonia pseudosolanacearum GMI1000

44.512

100

0.518
  pilA2 Legionella pneumophila str. Paris

50.37

95.745

0.482
  pilA/pilA1 Eikenella corrodens VA1

44.667

100

0.475
  pilA2 Legionella pneumophila strain ERS1305867

49.63

95.745

0.475
  pilE Neisseria gonorrhoeae MS11

38.509

100

0.44
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40.541

100

0.426
  pilE Neisseria gonorrhoeae strain FA1090

37.821

100

0.418
  pilA/pilAII Pseudomonas stutzeri DSM 10701

43.382

96.454

0.418
  pilA Pseudomonas aeruginosa PAK

36.842

100

0.397
  pilA Vibrio parahaemolyticus RIMD 2210633

41.985

92.908

0.39
  pilA Haemophilus influenzae 86-028NP

39.416

97.163

0.383

Multiple sequence alignment