Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   F0U83_RS04585 Genome accession   NZ_CP043869
Coordinates   976436..977659 (-) Length   407 a.a.
NCBI ID   WP_138988746.1    Uniprot ID   A0A5P1R8T9
Organism   Neptunomonas concharum strain JCM17730     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 971436..982659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U83_RS04560 (F0U83_04560) argJ 972588..973802 (+) 1215 WP_138988741.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  F0U83_RS04565 (F0U83_04565) - 973802..974743 (+) 942 WP_138988742.1 Nudix family hydrolase -
  F0U83_RS04570 (F0U83_04570) - 974724..974942 (-) 219 WP_138988743.1 DNA gyrase inhibitor YacG -
  F0U83_RS04575 (F0U83_04575) coaE 974939..975553 (-) 615 WP_138988744.1 dephospho-CoA kinase -
  F0U83_RS04580 (F0U83_04580) pilD 975562..976428 (-) 867 WP_138988745.1 prepilin peptidase Machinery gene
  F0U83_RS04585 (F0U83_04585) pilC 976436..977659 (-) 1224 WP_138988746.1 type II secretion system F family protein Machinery gene
  F0U83_RS04590 (F0U83_04590) pilB 977678..979390 (-) 1713 WP_138988747.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F0U83_RS04595 (F0U83_04595) comP 979630..980055 (+) 426 WP_138988748.1 pilin Machinery gene
  F0U83_RS17215 (F0U83_04600) comP 980127..980564 (+) 438 WP_138988749.1 pilin Machinery gene
  F0U83_RS04605 (F0U83_04605) - 980580..980924 (+) 345 WP_138988750.1 hypothetical protein -
  F0U83_RS04610 (F0U83_04610) nadC 980970..981809 (-) 840 WP_138988751.1 carboxylating nicotinate-nucleotide diphosphorylase -
  F0U83_RS04615 (F0U83_04615) ampD 981899..982456 (+) 558 WP_246077868.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 43912.49 Da        Isoelectric Point: 9.8661

>NTDB_id=386305 F0U83_RS04585 WP_138988746.1 976436..977659(-) (pilC) [Neptunomonas concharum strain JCM17730]
MAAKQKKPVTFNWQGKDKSGNLSKGKIDAVDVATAKALLRKQGILPKKIAKESSISFFSNKNKPIKPLDIAQFTRQMATM
MKSGVPLLQGMDIVANGTEKIKLKELIYDVRNSVNGGQDFAQSLASHPKYFDDLYCSLVGAGEQSGALETMLDRIATYKE
KVESLKAKIKKAMTYPAAVLGVGIIVSAILLVKVVPQFQSIFSSFGADLPAFTLFVLELSELAQAYWFIALIGFVLLGYG
FTKVKQRSQAFADFIDRAVLKAPIFGQILHKAAIARFSRTLATTFAAGVPLVNALDSAAGASGNVVYRNAIIQIRNGVST
GQSLQNAVTMTGVFPNMAIQMMAIGEEAGSLDMMLDKVASFYEEEVDNAVDNLSSLMEPLIMVVLGTLVGGLVVAMYLPI
FQLGNVV

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=386305 F0U83_RS04585 WP_138988746.1 976436..977659(-) (pilC) [Neptunomonas concharum strain JCM17730]
ATGGCAGCAAAACAGAAAAAACCGGTCACATTTAACTGGCAAGGTAAGGATAAGAGCGGCAACCTCAGTAAAGGTAAAAT
CGATGCGGTAGACGTAGCAACGGCCAAAGCTTTGCTGCGCAAGCAAGGAATTTTGCCTAAAAAAATTGCTAAAGAATCCT
CGATCTCATTTTTTAGTAATAAAAACAAACCGATTAAGCCCTTGGATATCGCCCAGTTTACCCGCCAAATGGCCACCATG
ATGAAGTCGGGTGTCCCTTTATTACAGGGTATGGATATTGTTGCTAACGGCACTGAGAAGATCAAACTCAAAGAGTTGAT
TTATGATGTGCGCAACTCCGTTAACGGTGGCCAAGACTTTGCCCAATCGCTCGCGAGCCACCCAAAATACTTTGATGACC
TCTATTGCAGCTTAGTGGGTGCGGGTGAGCAGTCTGGTGCCCTAGAAACTATGTTGGATCGAATCGCCACTTACAAAGAA
AAGGTCGAATCATTAAAGGCTAAAATTAAAAAAGCCATGACCTACCCCGCAGCAGTTTTAGGAGTCGGTATTATTGTATC
AGCTATTCTTTTAGTTAAAGTAGTACCACAATTCCAGTCAATTTTTTCCAGCTTTGGTGCCGACCTGCCTGCTTTTACTT
TGTTTGTGCTTGAACTATCTGAGCTTGCTCAGGCATATTGGTTCATTGCCCTTATTGGCTTTGTACTACTAGGTTATGGA
TTCACAAAAGTTAAACAGCGCTCCCAAGCCTTTGCCGATTTTATCGACAGGGCCGTTTTAAAAGCACCTATCTTCGGGCA
AATATTACATAAAGCTGCCATTGCTCGATTCTCCCGCACGTTAGCAACTACTTTTGCAGCGGGTGTACCTTTGGTTAATG
CGCTAGATTCTGCAGCGGGCGCATCCGGCAATGTTGTTTACCGTAATGCTATTATCCAAATTCGTAATGGCGTATCTACC
GGCCAGTCACTGCAAAATGCCGTTACTATGACCGGCGTCTTTCCTAATATGGCGATACAGATGATGGCCATTGGTGAGGA
AGCGGGCTCCTTGGATATGATGCTAGATAAGGTCGCCAGCTTCTATGAGGAGGAGGTAGATAACGCCGTTGATAACCTAT
CCAGCCTGATGGAGCCTTTAATTATGGTGGTACTAGGTACACTTGTCGGCGGGCTGGTTGTGGCTATGTATCTTCCAATC
TTCCAGCTGGGTAACGTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1R8T9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.705

100

0.597
  pilC Acinetobacter baylyi ADP1

56.235

100

0.565
  pilC Legionella pneumophila strain ERS1305867

56.219

98.771

0.555
  pilC Acinetobacter baumannii D1279779

56.784

97.789

0.555
  pilG Neisseria gonorrhoeae MS11

44.913

99.017

0.445
  pilG Neisseria meningitidis 44/76-A

44.417

99.017

0.44
  pilC Vibrio campbellii strain DS40M4

43.97

97.789

0.43
  pilC Vibrio cholerae strain A1552

42.402

100

0.425
  pilC Thermus thermophilus HB27

38.958

99.017

0.386

Multiple sequence alignment