Detailed information NTG0386304

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: F0U83_RS04580
• Genome accession: NZ_CP043869
• Coordinates: 975562..976428 (-)
• Length: 288 a.a.
• NCBI ID: WP_138988745.1
• Uniprot ID: -
• Organism: Neptunomonas concharum strain JCM17730
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 970562..981428

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F0U83_RS04560 (F0U83_04560)	argJ	972588..973802 (+)	1215	WP_138988741.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
F0U83_RS04565 (F0U83_04565)	-	973802..974743 (+)	942	WP_138988742.1	Nudix family hydrolase	-
F0U83_RS04570 (F0U83_04570)	-	974724..974942 (-)	219	WP_138988743.1	DNA gyrase inhibitor YacG	-
F0U83_RS04575 (F0U83_04575)	coaE	974939..975553 (-)	615	WP_138988744.1	dephospho-CoA kinase	-
F0U83_RS04580 (F0U83_04580)	pilD	975562..976428 (-)	867	WP_138988745.1	prepilin peptidase	Machinery gene
F0U83_RS04585 (F0U83_04585)	pilC	976436..977659 (-)	1224	WP_138988746.1	type II secretion system F family protein	Machinery gene
F0U83_RS04590 (F0U83_04590)	pilB	977678..979390 (-)	1713	WP_138988747.1	type IV-A pilus assembly ATPase PilB	Machinery gene
F0U83_RS04595 (F0U83_04595)	comP	979630..980055 (+)	426	WP_138988748.1	pilin	Machinery gene
F0U83_RS17215 (F0U83_04600)	comP	980127..980564 (+)	438	WP_138988749.1	pilin	Machinery gene
F0U83_RS04605 (F0U83_04605)	-	980580..980924 (+)	345	WP_138988750.1	hypothetical protein	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 32214.00 Da
• Isoelectric Point: 6.4811

>NTDB_id=386304 F0U83_RS04580 WP_138988745.1 975562..976428(-) (pilD) [Neptunomonas concharum strain JCM17730]
MNELFAWLVTEPTYTLVVCFLVSLLVGSFLNVVIYRVPAMMEREWQASIHEGENSDTQIPQDRFNLAVPASTCPHCGHRI
RWYENIPVVSYLFLKGQCSQCHAPISLRYPLIELLTAILSTLVIYQLGFNYAGFAAVVFTWALISLTFIDVDHQLLPDRI
TLPLLWLGLLVNSQNLFTSLHSAVFGAVAGYLVLWSVYWLFKLVTGKEGMGYGDFKLLAALGAWCGISQIPLLILLSSVA
GVLLAMLLMLFKRHEASNPLPFGPYLAIAGWIALLWGHDITSAYLQLY

Nucleotide

• Length: 867 bp

>NTDB_id=386304 F0U83_RS04580 WP_138988745.1 975562..976428(-) (pilD) [Neptunomonas concharum strain JCM17730]
ATGAACGAACTTTTTGCTTGGCTAGTAACCGAACCCACCTACACTCTTGTGGTCTGTTTTTTGGTATCGCTACTGGTAGG
TAGTTTTTTAAATGTGGTGATCTATCGCGTTCCGGCTATGATGGAGCGCGAGTGGCAAGCTTCCATTCATGAGGGCGAGA
ATAGCGACACTCAAATACCTCAAGATAGGTTTAACCTAGCCGTGCCTGCTTCTACCTGCCCCCACTGCGGCCATCGTATC
CGCTGGTATGAAAATATTCCGGTTGTGAGCTATCTATTCCTAAAAGGCCAATGCAGCCAGTGCCATGCACCTATCAGCCT
GCGCTACCCGCTTATCGAGTTGCTAACGGCAATACTCAGTACTTTAGTGATCTATCAGTTAGGGTTTAATTACGCAGGTT
TTGCTGCTGTTGTATTCACATGGGCACTGATTAGCCTCACCTTTATTGATGTGGACCACCAGCTACTCCCAGACCGTATC
ACCCTACCCTTGTTATGGCTCGGGTTATTGGTTAACTCCCAGAATCTGTTTACGTCGCTTCATTCCGCCGTTTTTGGTGC
CGTTGCAGGCTACTTAGTACTCTGGTCTGTCTATTGGCTCTTTAAACTTGTTACCGGCAAAGAGGGGATGGGCTATGGTG
ATTTTAAACTGCTTGCTGCTTTAGGCGCTTGGTGCGGTATATCACAAATCCCTCTGCTGATTTTGTTATCCTCTGTCGCA
GGCGTACTATTAGCGATGTTGCTGATGCTGTTTAAGCGCCATGAAGCCAGCAATCCTTTACCTTTTGGCCCTTATCTAGC
TATTGCAGGCTGGATTGCACTATTATGGGGCCATGATATTACATCTGCCTATCTTCAGCTTTATTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-126)

• Type IV leader peptidase family (Peptidase_A24) (138-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	51.748	99.306	0.514
pilD	Acinetobacter nosocomialis M2	51.049	99.306	0.507
pilD	Vibrio cholerae strain A1552	53.704	93.75	0.503
pilD	Vibrio campbellii strain DS40M4	51.812	95.833	0.497
pilD	Neisseria gonorrhoeae MS11	53.543	88.194	0.472