Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   F0U83_RS17215 Genome accession   NZ_CP043869
Coordinates   980127..980564 (+) Length   145 a.a.
NCBI ID   WP_138988749.1    Uniprot ID   A0A5P1R8Y1
Organism   Neptunomonas concharum strain JCM17730     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 975127..985564
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0U83_RS04580 (F0U83_04580) pilD 975562..976428 (-) 867 WP_138988745.1 prepilin peptidase Machinery gene
  F0U83_RS04585 (F0U83_04585) pilC 976436..977659 (-) 1224 WP_138988746.1 type II secretion system F family protein Machinery gene
  F0U83_RS04590 (F0U83_04590) pilB 977678..979390 (-) 1713 WP_138988747.1 type IV-A pilus assembly ATPase PilB Machinery gene
  F0U83_RS04595 (F0U83_04595) comP 979630..980055 (+) 426 WP_138988748.1 pilin Machinery gene
  F0U83_RS17215 (F0U83_04600) comP 980127..980564 (+) 438 WP_138988749.1 pilin Machinery gene
  F0U83_RS04605 (F0U83_04605) - 980580..980924 (+) 345 WP_138988750.1 hypothetical protein -
  F0U83_RS04610 (F0U83_04610) nadC 980970..981809 (-) 840 WP_138988751.1 carboxylating nicotinate-nucleotide diphosphorylase -
  F0U83_RS04615 (F0U83_04615) ampD 981899..982456 (+) 558 WP_246077868.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  F0U83_RS04620 (F0U83_04620) - 982525..983574 (+) 1050 WP_138988752.1 ABC transporter ATP-binding protein -
  F0U83_RS04625 (F0U83_04625) - 983576..985234 (-) 1659 WP_138988753.1 ABC transporter permease -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15239.60 Da        Isoelectric Point: 5.0029

>NTDB_id=386320 F0U83_RS17215 WP_138988749.1 980127..980564(+) (comP) [Neptunomonas concharum strain JCM17730]
MKNQEVSEVGFTLIELMIVVAIIAILASIAIPAYQDYTIRARVAEALIFATMSKATVGENIAINNVIGVNTCLGVTNITP
PDSTENVASSSCSAITGALTLNTTSKAGSLTLVLTPLLDASGAIRWNCSVANVNHNRYVPSECRI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=386320 F0U83_RS17215 WP_138988749.1 980127..980564(+) (comP) [Neptunomonas concharum strain JCM17730]
GTGAAGAATCAAGAGGTTAGTGAGGTTGGGTTTACTTTAATTGAGCTGATGATTGTGGTGGCAATTATTGCTATTCTGGC
TTCGATAGCTATACCTGCCTACCAAGATTACACGATTAGAGCTAGAGTTGCGGAAGCGTTGATTTTTGCAACGATGTCTA
AGGCAACAGTAGGGGAAAACATAGCCATAAATAATGTTATTGGTGTTAATACGTGCCTTGGTGTTACTAATATTACTCCT
CCTGATAGTACAGAAAATGTTGCATCTTCTTCTTGTAGCGCTATTACAGGTGCTTTAACACTAAATACCACATCAAAAGC
AGGTAGTTTAACTTTGGTTCTAACGCCTCTTCTTGATGCCTCTGGAGCAATTCGTTGGAATTGTTCTGTTGCTAATGTTA
ATCATAATAGATACGTTCCTTCTGAGTGCCGTATTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(40-144)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1R8Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Acinetobacter baylyi ADP1

48.649

100

0.497
  pilA2 Legionella pneumophila str. Paris

47.482

95.862

0.455
  pilA Ralstonia pseudosolanacearum GMI1000

39.394

100

0.448
  pilA2 Legionella pneumophila strain ERS1305867

46.043

95.862

0.441
  pilA/pilAI Pseudomonas stutzeri DSM 10701

38.816

100

0.407
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

30.208

100

0.4
  pilA/pilA1 Eikenella corrodens VA1

32.934

100

0.379
  pilE Neisseria gonorrhoeae strain FA1090

34.177

100

0.372
  pilE Neisseria gonorrhoeae MS11

33.125

100

0.366

Multiple sequence alignment