Detailed information NTG0381982

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: FQ342_RS15665
• Genome accession: NZ_CP043179
• Coordinates: 3389759..3391093 (-)
• Length: 444 a.a.
• NCBI ID: WP_011063538.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain SN15-2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3384759..3396093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FQ342_RS15650 (FQ342_15625)	-	3385129..3388191 (+)	3063	WP_011063541.1	pilus assembly protein	-
FQ342_RS15655 (FQ342_15630)	-	3388207..3388608 (+)	402	WP_011063540.1	type IV pilin protein	-
FQ342_RS15660 (FQ342_15635)	thiO	3388662..3389762 (+)	1101	WP_011063539.1	glycine oxidase ThiO	-
FQ342_RS15665 (FQ342_15640)	pilR	3389759..3391093 (-)	1335	WP_011063538.1	sigma-54-dependent transcriptional regulator	Regulator
FQ342_RS15670 (FQ342_15645)	-	3391519..3391752 (-)	234	WP_011063537.1	PP0621 family protein	-
FQ342_RS15675 (FQ342_15650)	-	3391877..3392902 (-)	1026	WP_011063536.1	outer membrane protein assembly factor BamD	-
FQ342_RS15680 (FQ342_15655)	rluD	3393053..3394015 (+)	963	WP_011063535.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
FQ342_RS15685 (FQ342_15660)	pgeF	3394012..3394737 (+)	726	WP_011063534.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 444 a.a.
• Molecular weight: 49274.55 Da
• Isoelectric Point: 8.6800

>NTDB_id=381982 FQ342_RS15665 WP_011063538.1 3389759..3391093(-) (pilR) [Pseudomonas protegens strain SN15-2]
MNPRQSVLVVDDATETRALVEITLGRMRLHTQSARTLQEARGRLARERFDLCLTDLQLPDGSGLELLRHIRQSHPNLPVA
LLSNGACAQASAGALQAGACQLLHKPLDLKQLRAWVGASLKLATDCATDDPARQLLGDSAPMNALRRHIDKLAHSLAAVY
ISGESGSGKERVARLLHQLGPRARYPFVPINCGAIPSELMESELFGHCKGSFSGAVSDQPGLFLAAHGGTLFLDEVADLP
LAMQVKLLRALQEKSVRPVGSQQEKTVDVRILCATHKDLKNEVETGRFRQDLYYRLNVIELRVPALRERRGDIPALAGHV
LQRLARDSGQPAVQLRPEALQALERYDFPGNVRELENLLERAQTLCEGRWIETDDLQLPRADSLEARSSAAATQLDLALH
LQQVERQLLLQALEETRWNRTAAARRLSLSFRSMRYRMKKLGLD

Nucleotide

• Length: 1335 bp

>NTDB_id=381982 FQ342_RS15665 WP_011063538.1 3389759..3391093(-) (pilR) [Pseudomonas protegens strain SN15-2]
ATGAACCCACGGCAATCGGTGCTGGTGGTCGATGACGCCACGGAAACCCGCGCCCTTGTGGAGATCACTCTGGGCCGAAT
GCGCTTGCACACCCAAAGTGCGCGCACCCTGCAGGAAGCCCGTGGCCGCCTGGCCCGGGAGCGCTTTGACCTGTGCCTGA
CCGACCTGCAGCTACCGGACGGCAGCGGGCTGGAGCTGCTGCGGCACATCCGCCAGTCCCACCCCAACCTTCCTGTGGCG
CTGCTAAGCAACGGCGCCTGTGCACAGGCCAGCGCGGGCGCCCTGCAGGCCGGAGCCTGCCAGTTGCTGCACAAGCCTCT
GGACCTCAAGCAACTGCGCGCTTGGGTAGGTGCCAGCCTGAAGCTGGCCACGGACTGCGCAACGGATGACCCTGCCCGGC
AATTGCTGGGAGACTCGGCGCCCATGAATGCCCTGCGTCGCCACATCGACAAGCTGGCCCACAGCCTGGCGGCGGTCTAT
ATCAGCGGTGAATCCGGCAGTGGCAAGGAGCGGGTCGCCCGCCTGCTCCACCAGCTTGGCCCCAGGGCCCGATACCCGTT
CGTCCCGATCAACTGCGGGGCGATTCCTTCCGAATTGATGGAGAGTGAACTCTTCGGCCATTGCAAAGGCAGCTTCAGTG
GCGCCGTCAGCGATCAGCCCGGGTTATTTCTGGCCGCCCACGGCGGCACCCTGTTTCTTGATGAGGTCGCCGACCTGCCC
CTGGCCATGCAAGTAAAACTGCTGCGAGCCTTGCAGGAAAAATCCGTGCGCCCTGTAGGCAGCCAACAGGAAAAAACCGT
CGACGTGCGGATTCTCTGTGCCACCCACAAGGACCTGAAAAACGAGGTAGAGACCGGACGCTTTCGCCAGGACCTCTACT
ACCGCCTGAACGTCATCGAGTTGCGAGTCCCGGCGTTGCGCGAGCGCCGTGGCGACATCCCCGCACTGGCCGGGCACGTC
CTGCAGCGCCTGGCCAGGGACAGCGGACAGCCTGCCGTCCAGCTACGTCCCGAAGCCCTGCAAGCCCTGGAGCGCTATGA
CTTTCCGGGCAACGTGCGAGAGCTGGAAAACCTGCTGGAACGGGCGCAGACCCTATGCGAAGGACGCTGGATAGAAACAG
ACGACCTGCAGTTGCCCAGAGCCGACAGCCTTGAAGCCCGATCATCGGCGGCGGCCACCCAGCTAGACCTGGCGCTGCAC
CTGCAACAGGTGGAGCGCCAGCTGCTGCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCCCGGCGGCT
GAGCCTGTCGTTTCGTTCGATGCGTTACCGCATGAAGAAGCTCGGGCTGGACTAG

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Response regulator receiver domain (Response_reg) (7-114)

• Bacterial regulatory protein, Fis family (HTH_8) (401-441)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.205	99.775	0.631
pilR	Acinetobacter baumannii strain A118	45.752	100	0.473
luxO	Vibrio cholerae strain A1552	37.558	97.748	0.367