Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   FWK55_RS08980 Genome accession   NZ_CP042990
Coordinates   1983979..1984314 (+) Length   111 a.a.
NCBI ID   WP_012341067.1    Uniprot ID   A0A9Q7E5D2
Organism   Histophilus somni strain UOC-KLM-ATR-011     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1978979..1989314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FWK55_RS08955 (FWK55_08955) - 1980304..1980783 (-) 480 WP_011608283.1 Dps family protein -
  FWK55_RS08960 (FWK55_08960) - 1980936..1981505 (-) 570 WP_075293539.1 anthranilate synthase component II -
  FWK55_RS08965 (FWK55_08965) - 1981562..1982569 (+) 1008 WP_075293540.1 aminodeoxychorismate synthase component I -
  FWK55_RS08970 (FWK55_08970) - 1982718..1983299 (+) 582 WP_075293541.1 aminotransferase class IV family protein -
  FWK55_RS08975 (FWK55_08975) - 1983360..1983749 (+) 390 WP_075293542.1 RidA family protein -
  FWK55_RS08980 (FWK55_08980) comE1/comEA 1983979..1984314 (+) 336 WP_012341067.1 helix-hairpin-helix domain-containing protein Machinery gene
  FWK55_RS08985 (FWK55_08985) rdgB 1984504..1985100 (+) 597 WP_075293543.1 RdgB/HAM1 family non-canonical purine NTP pyrophosphatase -
  FWK55_RS08990 (FWK55_08990) hemW 1985100..1986278 (+) 1179 WP_075293544.1 radical SAM family heme chaperone HemW -
  FWK55_RS08995 (FWK55_08995) rpiA 1986374..1987033 (+) 660 WP_075293545.1 ribose-5-phosphate isomerase RpiA -
  FWK55_RS09000 (FWK55_09000) serA 1987059..1988291 (+) 1233 WP_075293546.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12138.14 Da        Isoelectric Point: 10.2041

>NTDB_id=379948 FWK55_RS08980 WP_012341067.1 1983979..1984314(+) (comE1/comEA) [Histophilus somni strain UOC-KLM-ATR-011]
MKKITSFFKSLLMLSVALGAFNAFAETPTQPPSSAQATQQVEPVIISDKLNINTATAEEIKHALIGIGSKKAEAIVQYRE
KFGKFTAAEQLLEVKGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 336 bp        

>NTDB_id=379948 FWK55_RS08980 WP_012341067.1 1983979..1984314(+) (comE1/comEA) [Histophilus somni strain UOC-KLM-ATR-011]
ATGAAAAAAATAACCTCATTTTTCAAATCATTATTGATGTTAAGTGTTGCTTTGGGGGCTTTTAATGCATTTGCAGAAAC
ACCAACTCAACCACCTAGTTCAGCCCAAGCAACACAACAAGTTGAACCGGTCATTATTAGCGATAAATTGAACATCAATA
CTGCAACAGCGGAAGAAATTAAACACGCTTTAATAGGAATTGGAAGCAAAAAAGCCGAGGCAATTGTTCAATATCGTGAA
AAATTTGGTAAATTTACCGCGGCTGAACAGTTACTTGAAGTCAAGGGGATTGGCAAAGCAACACTAGAAAAAAATAGAGA
TCGCATCATTTTCTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(49-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

60.36

100

0.604
  comEA/comE1 Glaesserella parasuis strain SC1401

53.333

100

0.577
  comEA Vibrio cholerae C6706

44.954

98.198

0.441
  comEA Vibrio cholerae strain A1552

44.954

98.198

0.441
  comEA Vibrio campbellii strain DS40M4

43.269

93.694

0.405

Multiple sequence alignment