Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HBA22_RS27580 Genome accession   NZ_CP050149
Coordinates   5925260..5925784 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain CHA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5920260..5930784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HBA22_RS27565 (HBA22_27575) aroB 5921376..5922482 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  HBA22_RS27570 (HBA22_27580) aroK 5922532..5923050 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HBA22_RS27575 (HBA22_27585) pilQ 5923062..5925206 (-) 2145 WP_003123619.1 type 4a pilus secretin PilQ Machinery gene
  HBA22_RS27580 (HBA22_27590) comL/pilP 5925260..5925784 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HBA22_RS27585 (HBA22_27595) pilO 5925781..5926404 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  HBA22_RS27590 (HBA22_27600) pilN 5926401..5926997 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  HBA22_RS27595 (HBA22_27605) pilM 5926997..5928061 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HBA22_RS27600 (HBA22_27610) - 5928246..5930717 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=377366 HBA22_RS27580 WP_003095836.1 5925260..5925784(-) (comL/pilP) [Pseudomonas aeruginosa strain CHA]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=377366 HBA22_RS27580 WP_003095836.1 5925260..5925784(-) (comL/pilP) [Pseudomonas aeruginosa strain CHA]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGTACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment