Detailed information    

insolico Bioinformatically predicted

Overview


Name   recR   Type   Machinery gene
Locus tag   ECTR2_RS02190 Genome accession   NC_017343
Coordinates   470510..471106 (+) Length   198 a.a.
NCBI ID   WP_000559159.1    Uniprot ID   Q99WC3
Organism   Staphylococcus aureus subsp. aureus ECT-R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 465510..476106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTR2_RS15145 - 466058..466129 (-) 72 WP_371914726.1 hypothetical protein -
  ECTR2_RS02170 (ECTR2_411) - 466177..467496 (-) 1320 WP_001557163.1 ISL3-like element IS1181 family transposase -
  ECTR2_RS02175 (ECTR2_412) - 467806..468330 (+) 525 WP_001167828.1 GNAT family N-acetyltransferase -
  ECTR2_RS02180 (ECTR2_413) dnaX 468399..470096 (+) 1698 WP_001109040.1 DNA polymerase III subunit gamma/tau -
  ECTR2_RS02185 (ECTR2_414) - 470186..470503 (+) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  ECTR2_RS02190 (ECTR2_415) recR 470510..471106 (+) 597 WP_000559159.1 recombination mediator RecR Machinery gene
  ECTR2_RS02195 - 471311..471416 (+) 106 Protein_433 hypothetical protein -

Sequence


Protein


Download         Length: 198 a.a.        Molecular weight: 22072.49 Da        Isoelectric Point: 4.7564

>NTDB_id=37149 ECTR2_RS02190 WP_000559159.1 470510..471106(+) (recR) [Staphylococcus aureus subsp. aureus ECT-R]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKSDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=37149 ECTR2_RS02190 WP_000559159.1 470510..471106(+) (recR) [Staphylococcus aureus subsp. aureus ECT-R]
ATGCATTATCCAGAACCTATATCAAAGCTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAACAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCACCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAGCG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains


Predicted by InterProScan.

(80-171)

(40-78)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q99WC3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773

  recR Streptococcus pneumoniae R6

64.141

100

0.641

  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475


Multiple sequence alignment