Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   FCN45_RS15675 Genome accession   NZ_CP040095
Coordinates   3410564..3411556 (-) Length   330 a.a.
NCBI ID   WP_137386423.1    Uniprot ID   -
Organism   Pantoea sp. SO10     
Function   pseudopilus biogenesis (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3405564..3416556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FCN45_RS15645 (FCN45_15645) - 3406221..3406733 (+) 513 WP_137386420.1 SprT family zinc-dependent metalloprotease -
  FCN45_RS15650 (FCN45_15650) endA 3406822..3407529 (+) 708 WP_137386421.1 deoxyribonuclease I -
  FCN45_RS15655 (FCN45_15655) rsmE 3407603..3408334 (+) 732 WP_008107252.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  FCN45_RS15660 (FCN45_15660) gshB 3408412..3409356 (+) 945 WP_101761909.1 glutathione synthase -
  FCN45_RS15665 (FCN45_15665) - 3409439..3410002 (+) 564 WP_137386422.1 YqgE/AlgH family protein -
  FCN45_RS15670 (FCN45_15670) ruvX 3410002..3410418 (+) 417 WP_101761907.1 Holliday junction resolvase RuvX -
  FCN45_RS15675 (FCN45_15675) pilT 3410564..3411556 (-) 993 WP_137386423.1 type IV pilus twitching motility protein PilT Machinery gene
  FCN45_RS15680 (FCN45_15680) - 3411573..3412280 (+) 708 WP_137386424.1 YggS family pyridoxal phosphate-dependent enzyme -
  FCN45_RS15685 (FCN45_15685) - 3412293..3412847 (+) 555 WP_008107240.1 YggT family protein -
  FCN45_RS15690 (FCN45_15690) - 3412868..3413461 (+) 594 WP_137386425.1 XTP/dITP diphosphatase -
  FCN45_RS15695 (FCN45_15695) hemW 3413454..3414605 (+) 1152 WP_101761903.1 radical SAM family heme chaperone HemW -
  FCN45_RS15700 (FCN45_15700) - 3414646..3416409 (-) 1764 WP_137386426.1 Ig-like domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35775.14 Da        Isoelectric Point: 6.6168

>NTDB_id=362054 FCN45_RS15675 WP_137386423.1 3410564..3411556(-) (pilT) [Pantoea sp. SO10]
MELDEIVALSVKHNAADLHLCSGHLPHWRRQGVLEPIPQQSALDGGWLEAFMQQWLTASQQAELEENGHVDFAITLASGI
RLRANLFMQRHGLSLALRLIASQVPDLSSLHLPEVVSQLLQLEEGLILITGATGSGKSTTLAAMVDCLNRQQARHILTLE
DPIEFVHRSQRSLIQQREVGAHCASFQHGLKAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGATQAVDR
LVDVFPAEEKNLVRTQLAGSLKAVLAQRLVPAKAGGRIGLFEVLVATPAVANLIREGKMHQLPGVLQTGAQAGMQTFAQS
EQGRQAAGMI

Nucleotide


Download         Length: 993 bp        

>NTDB_id=362054 FCN45_RS15675 WP_137386423.1 3410564..3411556(-) (pilT) [Pantoea sp. SO10]
ATGGAGTTGGATGAAATAGTGGCCCTTAGTGTAAAGCATAACGCCGCCGATCTGCACCTTTGCAGCGGACATTTGCCGCA
CTGGCGGCGACAAGGCGTGCTGGAGCCGATTCCGCAGCAGAGCGCGCTGGATGGCGGCTGGCTGGAAGCCTTTATGCAGC
AGTGGCTCACGGCGTCGCAGCAGGCCGAGCTGGAGGAGAACGGCCACGTTGACTTCGCGATTACGCTTGCCAGCGGCATA
CGGCTGCGCGCCAACCTGTTTATGCAGCGTCACGGCTTATCGCTGGCGCTACGGCTGATTGCCAGCCAGGTGCCCGATCT
CAGCAGCCTGCATCTGCCCGAGGTGGTGAGCCAGCTGTTACAGCTGGAAGAGGGGCTGATTTTAATTACCGGCGCCACCG
GCAGCGGCAAATCCACCACGCTGGCGGCGATGGTAGATTGTCTGAATCGTCAGCAGGCGCGGCACATTCTGACGCTGGAA
GATCCGATTGAGTTTGTGCATCGCAGCCAGCGCTCGCTGATTCAACAGCGCGAAGTGGGTGCGCACTGCGCCTCGTTTCA
ACACGGGCTGAAAGCCGCGCTGCGTGAAGATCCTGATGTGATTCTGCTCGGCGAACTGCGCGACAGCGAAACCATCCGCC
TGGCGCTCACAGCTGCAGAAACCGGGCATCTGGTGCTGGCTACGCTCCATACGCGCGGCGCAACCCAGGCGGTTGATCGG
CTAGTGGATGTCTTTCCCGCTGAAGAGAAAAACCTGGTGCGCACTCAATTAGCGGGCAGCCTGAAAGCGGTGCTGGCGCA
ACGTTTAGTGCCGGCAAAAGCGGGCGGGCGTATTGGCTTGTTTGAAGTGTTGGTGGCGACGCCAGCGGTGGCGAACCTGA
TCCGCGAAGGCAAGATGCATCAGTTGCCTGGCGTGTTGCAAACCGGCGCGCAGGCTGGCATGCAAACCTTTGCGCAGAGC
GAGCAGGGGCGTCAGGCGGCGGGGATGATTTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(47-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Neisseria meningitidis 8013

48.649

100

0.491
  pilT Neisseria gonorrhoeae MS11

48.649

100

0.491
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.193

100

0.485
  pilT Vibrio cholerae strain A1552

48.193

100

0.485
  pilT Pseudomonas stutzeri DSM 10701

47.273

100

0.473
  pilT Acinetobacter baylyi ADP1

46.97

100

0.47
  pilT Pseudomonas aeruginosa PAK

46.364

100

0.464
  pilT Acinetobacter baumannii D1279779

46.364

100

0.464
  pilT Acinetobacter baumannii strain A118

46.364

100

0.464
  pilT Acinetobacter nosocomialis M2

46.061

100

0.461
  pilT Legionella pneumophila strain Lp02

46.708

96.667

0.452
  pilT Legionella pneumophila strain ERS1305867

46.708

96.667

0.452
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.652

97.576

0.445
  pilU Pseudomonas stutzeri DSM 10701

41.615

97.576

0.406
  pilU Vibrio cholerae strain A1552

41.433

97.273

0.403
  pilU Acinetobacter baylyi ADP1

37.578

97.576

0.367

Multiple sequence alignment