Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   I33_RS07840 Genome accession   NC_017195
Coordinates   1542899..1543348 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis subsp. subtilis str. RO-NN-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1537899..1548348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I33_RS07800 (I33_1675) ctaE 1537919..1538542 (+) 624 WP_014476720.1 cytochrome c oxidase subunit III -
  I33_RS07805 (I33_1676) ctaF 1538545..1538877 (+) 333 WP_014476721.1 cytochrome c oxidase subunit IVB -
  I33_RS07810 (I33_1677) ctaG 1538905..1539798 (+) 894 WP_014476722.1 cytochrome c oxidase assembly factor CtaG -
  I33_RS07815 (I33_1678) ylbA 1539830..1540192 (-) 363 WP_003232238.1 YugN family protein -
  I33_RS07820 (I33_1679) ylbB 1540332..1540778 (+) 447 WP_014476723.1 CBS domain-containing protein -
  I33_RS07825 (I33_1680) ylbC 1540862..1541902 (+) 1041 WP_041519272.1 CAP domain-containing protein -
  I33_RS07830 (I33_1681) ylbD 1542130..1542528 (+) 399 WP_014476725.1 YlbD family protein -
  I33_RS07835 (I33_1682) ylbE 1542544..1542783 (+) 240 WP_014476726.1 YlbE-like family protein -
  I33_RS07840 (I33_1683) ylbF 1542899..1543348 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  I33_RS07845 (I33_1684) ylbG 1543403..1543675 (+) 273 WP_009967171.1 YlbG family protein -
  I33_RS07850 (I33_1686) rsmD 1543997..1544551 (+) 555 WP_014476728.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  I33_RS07855 (I33_1687) coaD 1544556..1545041 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  I33_RS07860 (I33_1688) spoVV 1545051..1546277 (-) 1227 WP_014476729.1 dipicolinic acid transporter SpoVV -
  I33_RS07865 (I33_1689) ylbK 1546458..1547240 (+) 783 WP_003232221.1 patatin family protein -
  I33_RS07870 (I33_1690) sepM 1547242..1548267 (+) 1026 WP_014476730.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=35970 I33_RS07840 WP_003221370.1 1542899..1543348(+) (ylbF) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=35970 I33_RS07840 WP_003221370.1 1542899..1543348(+) (ylbF) [Bacillus subtilis subsp. subtilis str. RO-NN-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCTATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment