Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   GR129_RS22805 Genome accession   NZ_CP047144
Coordinates   5081556..5082539 (+) Length   327 a.a.
NCBI ID   WP_145487127.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 5076556..5087539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS22790 (GR129_22790) - 5078027..5079646 (+) 1620 WP_159704674.1 ABC transporter substrate-binding protein -
  GR129_RS22795 (GR129_22795) - 5079652..5080575 (+) 924 WP_145487125.1 ABC transporter permease -
  GR129_RS22800 (GR129_22800) - 5080568..5081548 (+) 981 WP_159704677.1 ABC transporter permease -
  GR129_RS22805 (GR129_22805) amiE 5081556..5082539 (+) 984 WP_145487127.1 ABC transporter ATP-binding protein Regulator
  GR129_RS22810 (GR129_22810) - 5082523..5083584 (+) 1062 WP_159704680.1 dipeptide ABC transporter ATP-binding protein -
  GR129_RS22815 (GR129_22815) - 5083713..5085827 (-) 2115 WP_159704683.1 prolyl oligopeptidase family serine peptidase -
  GR129_RS22820 (GR129_22820) - 5086005..5086199 (+) 195 WP_037659963.1 hypothetical protein -
  GR129_RS22825 (GR129_22825) mshB 5086240..5087118 (+) 879 WP_159704686.1 N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha- D-glucopyranoside deacetylase -
  GR129_RS22830 (GR129_22830) - 5087142..5087534 (+) 393 WP_145487274.1 DUF6113 family protein -

Sequence


Protein


Download         Length: 327 a.a.        Molecular weight: 35969.72 Da        Isoelectric Point: 7.1399

>NTDB_id=357619 GR129_RS22805 WP_145487127.1 5081556..5082539(+) (amiE) [Streptomyces sp. HF10]
MLLEVRDLHVEFRTRDGVARAVNGVSYAVDEGETLAVLGESGSGKSVTAQAVMGILDMPPGRITGGEILFQGRDLLRMKE
EDRRELRGARMAMIFQDALSALNPVLSVGDQLGELFVVHRGMSRKAARARAVELMDRVRIPGAAQRVRDYPHQFSGGMRQ
RIMIAMALALEPALVIADEPTTALDVTVQAQVMDLLAELQREYRMGLVLITHDLGVVADVADRIAVMYAGRIVESAPVHD
IYKAPAHPYTRGLLDSIPRLDLKGRELYAIKGLPPNLTRVPPGCSFHPRCPMARGVCRAEVPPLYEVSEVRGSACHFWRE
CLGGDER

Nucleotide


Download         Length: 984 bp        

>NTDB_id=357619 GR129_RS22805 WP_145487127.1 5081556..5082539(+) (amiE) [Streptomyces sp. HF10]
ATGCTGCTCGAAGTCCGCGATCTGCACGTGGAGTTCAGGACCCGGGACGGCGTGGCCCGGGCCGTGAACGGGGTGTCGTA
CGCCGTCGACGAGGGGGAGACACTGGCCGTGCTCGGCGAGTCCGGGTCGGGCAAGTCGGTGACCGCGCAGGCCGTGATGG
GCATCCTCGACATGCCGCCGGGGCGGATCACCGGCGGCGAGATCCTCTTCCAGGGCCGTGATCTGCTGCGGATGAAGGAG
GAGGACCGGCGGGAACTGCGGGGCGCCCGGATGGCGATGATCTTCCAGGACGCGCTGTCGGCCCTCAACCCGGTGCTCTC
CGTGGGCGATCAGCTCGGCGAACTGTTCGTGGTGCACCGGGGGATGTCCCGCAAGGCCGCGCGGGCCAGGGCCGTCGAGC
TGATGGACCGGGTGCGCATCCCGGGCGCGGCCCAGCGGGTGCGCGACTACCCCCACCAGTTCTCCGGCGGGATGCGCCAG
CGGATCATGATCGCCATGGCGCTGGCCCTGGAACCCGCCCTGGTCATCGCCGACGAACCCACCACCGCCCTGGACGTCAC
CGTGCAGGCGCAGGTCATGGATCTGCTCGCCGAACTGCAGCGCGAGTACCGCATGGGGCTCGTCCTCATCACCCACGACC
TCGGGGTGGTCGCGGACGTGGCCGACCGGATCGCCGTGATGTACGCCGGGCGGATCGTGGAGTCGGCGCCGGTGCACGAC
ATCTACAAGGCGCCCGCCCACCCCTACACCCGGGGCCTGCTCGACTCCATCCCGCGCCTGGACCTCAAGGGGCGGGAGCT
GTACGCCATCAAGGGCCTGCCGCCGAACCTGACGCGGGTGCCGCCGGGCTGCTCCTTCCATCCGCGCTGCCCGATGGCCC
GGGGCGTCTGCCGCGCCGAGGTGCCCCCGCTGTACGAGGTGTCCGAAGTCCGCGGCAGCGCCTGCCACTTCTGGAGGGAG
TGCCTCGGTGGCGACGAGCGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

46.729

98.165

0.459

  amiE Streptococcus thermophilus LMG 18311

46.417

98.165

0.456

  amiE Streptococcus thermophilus LMD-9

46.417

98.165

0.456

  oppD Streptococcus mutans UA159

46.497

96.024

0.446


Multiple sequence alignment