Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | HOCH_RS23905 | Genome accession | NC_013440 |
| Coordinates | 6606825..6607925 (-) | Length | 366 a.a. |
| NCBI ID | WP_012829915.1 | Uniprot ID | D0LSU5 |
| Organism | Haliangium ochraceum DSM 14365 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6601825..6612925
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HOCH_RS23890 (Hoch_4824) | - | 6601853..6603778 (+) | 1926 | WP_012829912.1 | amino acid permease | - |
| HOCH_RS23895 (Hoch_4825) | - | 6603824..6605572 (-) | 1749 | WP_012829913.1 | two-component system sensor histidine kinase NtrB | - |
| HOCH_RS23900 (Hoch_4826) | - | 6605578..6606789 (-) | 1212 | WP_012829914.1 | type II secretion system F family protein | - |
| HOCH_RS23905 (Hoch_4827) | pilT | 6606825..6607925 (-) | 1101 | WP_012829915.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| HOCH_RS23910 (Hoch_4828) | pilB | 6607927..6609618 (-) | 1692 | WP_012829916.1 | type IV-A pilus assembly ATPase PilB | - |
| HOCH_RS23915 (Hoch_4829) | - | 6609971..6611152 (+) | 1182 | WP_045119316.1 | class I SAM-dependent rRNA methyltransferase | - |
| HOCH_RS23920 (Hoch_4830) | - | 6611176..6612288 (+) | 1113 | WP_012829918.1 | TRAP transporter substrate-binding protein | - |
Sequence
Protein
Download Length: 366 a.a. Molecular weight: 40380.46 Da Isoelectric Point: 7.8236
>NTDB_id=35541 HOCH_RS23905 WP_012829915.1 6606825..6607925(-) (pilT) [Haliangium ochraceum DSM 14365]
MGTPSLQQLLRTMIEQKASDLHVTVGTPPQLRIDGSLVPLRTEPLNGTDTKVICYDAINEQQKMRFEEDLELDLSFAIKN
LARFRGNLFMQRGSVGGVFRVIPFKVPPLADLGLPKSVEELLTRSQGLVLVTGPTGSGKSTTLASMIDYLNQTRRGHIVT
IEDPVEFVHDHKRCVVNQREVGADTKSFGDALKYVLRQDPDIVLVGEMRNLETIEAALTLAETGHLCMATLHTNSAAQSI
NRIIDVFPPHQQPQIRAVLSFVLQGVVSQTLVPRADGGGRAMAAEVMIPNPAIRNLIREDKTHQIYSTMQVGQTRYGMQT
MNQALCTLFVRRQVTLEEALARSHDVEELKTLISSAQGGGGARPRR
MGTPSLQQLLRTMIEQKASDLHVTVGTPPQLRIDGSLVPLRTEPLNGTDTKVICYDAINEQQKMRFEEDLELDLSFAIKN
LARFRGNLFMQRGSVGGVFRVIPFKVPPLADLGLPKSVEELLTRSQGLVLVTGPTGSGKSTTLASMIDYLNQTRRGHIVT
IEDPVEFVHDHKRCVVNQREVGADTKSFGDALKYVLRQDPDIVLVGEMRNLETIEAALTLAETGHLCMATLHTNSAAQSI
NRIIDVFPPHQQPQIRAVLSFVLQGVVSQTLVPRADGGGRAMAAEVMIPNPAIRNLIREDKTHQIYSTMQVGQTRYGMQT
MNQALCTLFVRRQVTLEEALARSHDVEELKTLISSAQGGGGARPRR
Nucleotide
Download Length: 1101 bp
>NTDB_id=35541 HOCH_RS23905 WP_012829915.1 6606825..6607925(-) (pilT) [Haliangium ochraceum DSM 14365]
ATGGGCACTCCCTCGCTTCAGCAGCTCCTTCGCACGATGATCGAGCAGAAGGCATCGGATCTCCACGTCACCGTGGGGAC
GCCGCCGCAGCTCCGCATCGACGGCTCCCTGGTGCCCCTGCGCACCGAGCCGCTCAACGGCACCGACACCAAGGTCATCT
GCTACGACGCGATCAACGAGCAGCAGAAGATGCGCTTCGAGGAGGACCTCGAGCTCGACCTCTCGTTCGCGATCAAGAAC
CTGGCCCGCTTCCGCGGCAACCTGTTCATGCAGCGCGGCTCGGTCGGCGGCGTGTTCCGCGTCATCCCCTTCAAGGTGCC
GCCGCTGGCCGATCTCGGGCTGCCGAAATCGGTCGAGGAGCTGCTGACGCGCTCACAGGGCCTGGTGCTGGTCACCGGGC
CCACGGGCTCGGGTAAATCGACCACCCTGGCGTCGATGATCGACTACCTCAACCAGACCCGGCGCGGTCACATCGTGACC
ATCGAGGATCCGGTCGAGTTCGTGCACGACCACAAGCGCTGCGTGGTCAACCAGCGCGAGGTCGGGGCCGACACCAAGTC
CTTCGGCGACGCGCTCAAATACGTGCTGCGCCAGGATCCGGATATCGTCCTGGTGGGCGAGATGCGCAACCTCGAGACCA
TCGAGGCGGCGCTCACCCTGGCCGAGACCGGCCACCTGTGCATGGCCACCCTGCACACCAACTCCGCGGCGCAGAGCATC
AACCGCATCATCGACGTGTTCCCGCCGCACCAGCAGCCGCAGATCCGCGCGGTGCTGTCCTTCGTGCTGCAGGGAGTCGT
CAGCCAGACCCTGGTGCCGCGCGCCGACGGCGGCGGTCGCGCCATGGCCGCCGAGGTCATGATTCCCAACCCCGCCATCC
GCAACCTCATCCGCGAGGACAAGACCCACCAGATCTACTCGACCATGCAGGTGGGTCAGACGCGCTACGGTATGCAGACC
ATGAACCAGGCCCTGTGTACGCTGTTCGTGCGGCGGCAGGTGACGCTGGAGGAAGCGCTCGCCCGTTCGCACGATGTCGA
GGAGCTCAAGACCCTGATCTCGTCCGCGCAGGGCGGCGGCGGGGCGCGACCACGACGCTAA
ATGGGCACTCCCTCGCTTCAGCAGCTCCTTCGCACGATGATCGAGCAGAAGGCATCGGATCTCCACGTCACCGTGGGGAC
GCCGCCGCAGCTCCGCATCGACGGCTCCCTGGTGCCCCTGCGCACCGAGCCGCTCAACGGCACCGACACCAAGGTCATCT
GCTACGACGCGATCAACGAGCAGCAGAAGATGCGCTTCGAGGAGGACCTCGAGCTCGACCTCTCGTTCGCGATCAAGAAC
CTGGCCCGCTTCCGCGGCAACCTGTTCATGCAGCGCGGCTCGGTCGGCGGCGTGTTCCGCGTCATCCCCTTCAAGGTGCC
GCCGCTGGCCGATCTCGGGCTGCCGAAATCGGTCGAGGAGCTGCTGACGCGCTCACAGGGCCTGGTGCTGGTCACCGGGC
CCACGGGCTCGGGTAAATCGACCACCCTGGCGTCGATGATCGACTACCTCAACCAGACCCGGCGCGGTCACATCGTGACC
ATCGAGGATCCGGTCGAGTTCGTGCACGACCACAAGCGCTGCGTGGTCAACCAGCGCGAGGTCGGGGCCGACACCAAGTC
CTTCGGCGACGCGCTCAAATACGTGCTGCGCCAGGATCCGGATATCGTCCTGGTGGGCGAGATGCGCAACCTCGAGACCA
TCGAGGCGGCGCTCACCCTGGCCGAGACCGGCCACCTGTGCATGGCCACCCTGCACACCAACTCCGCGGCGCAGAGCATC
AACCGCATCATCGACGTGTTCCCGCCGCACCAGCAGCCGCAGATCCGCGCGGTGCTGTCCTTCGTGCTGCAGGGAGTCGT
CAGCCAGACCCTGGTGCCGCGCGCCGACGGCGGCGGTCGCGCCATGGCCGCCGAGGTCATGATTCCCAACCCCGCCATCC
GCAACCTCATCCGCGAGGACAAGACCCACCAGATCTACTCGACCATGCAGGTGGGTCAGACGCGCTACGGTATGCAGACC
ATGAACCAGGCCCTGTGTACGCTGTTCGTGCGGCGGCAGGTGACGCTGGAGGAAGCGCTCGCCCGTTCGCACGATGTCGA
GGAGCTCAAGACCCTGATCTCGTCCGCGCAGGGCGGCGGCGGGGCGCGACCACGACGCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
53.911 |
97.814 |
0.527 |
| pilT | Legionella pneumophila strain Lp02 |
52.047 |
93.443 |
0.486 |
| pilT | Legionella pneumophila strain ERS1305867 |
52.047 |
93.443 |
0.486 |
| pilT | Acinetobacter baylyi ADP1 |
51.488 |
91.803 |
0.473 |
| pilT | Pseudomonas aeruginosa PAK |
51.796 |
91.257 |
0.473 |
| pilT | Pseudomonas stutzeri DSM 10701 |
50 |
93.989 |
0.47 |
| pilT | Acinetobacter nosocomialis M2 |
52.147 |
89.071 |
0.464 |
| pilT | Acinetobacter baumannii strain A118 |
52.147 |
89.071 |
0.464 |
| pilT | Acinetobacter baumannii D1279779 |
52.147 |
89.071 |
0.464 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
48.071 |
92.077 |
0.443 |
| pilT | Vibrio cholerae strain A1552 |
48.071 |
92.077 |
0.443 |
| pilT | Neisseria meningitidis 8013 |
45.672 |
91.53 |
0.418 |
| pilT | Neisseria gonorrhoeae MS11 |
45.672 |
91.53 |
0.418 |
| pilU | Vibrio cholerae strain A1552 |
43.059 |
96.448 |
0.415 |
| pilU | Pseudomonas stutzeri DSM 10701 |
43.391 |
95.082 |
0.413 |
| pilU | Acinetobacter baylyi ADP1 |
42.229 |
93.169 |
0.393 |