Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   GII78_RS16045 Genome accession   NZ_CP045824
Coordinates   3052903..3053907 (-) Length   334 a.a.
NCBI ID   WP_069703823.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B10     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 3047903..3058907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS16020 (GII78_16020) acuA 3048830..3049462 (+) 633 WP_029726417.1 acetoin utilization protein acetyltransferase AcuA -
  GII78_RS16025 (GII78_16025) acuB 3049489..3050133 (+) 645 WP_003229294.1 acetoin utilization AcuB family protein -
  GII78_RS16030 (GII78_16030) acuC 3050130..3051293 (+) 1164 WP_015251447.1 acetoin utilization protein AcuC -
  GII78_RS16035 (GII78_16035) motS 3051304..3052032 (-) 729 WP_003229290.1 flagellar motor protein MotS -
  GII78_RS16040 (GII78_16040) motP 3052022..3052840 (-) 819 WP_014477672.1 flagellar motor protein MotP -
  GII78_RS16045 (GII78_16045) ccpA 3052903..3053907 (-) 1005 WP_069703823.1 catabolite control protein A Regulator
  GII78_RS16050 (GII78_16050) aroX 3054183..3055259 (-) 1077 WP_003223454.1 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase -
  GII78_RS16055 (GII78_16055) ytxJ 3055496..3055822 (-) 327 WP_014480571.1 bacillithiol system redox-active protein YtxJ -
  GII78_RS16060 (GII78_16060) ytxH 3055846..3056301 (-) 456 WP_004398549.1 YtxH domain-containing protein -
  GII78_RS16065 (GII78_16065) ytxG 3056332..3056754 (-) 423 WP_003229276.1 DUF948 domain-containing protein -
  GII78_RS16070 (GII78_16070) murC 3056916..3058214 (-) 1299 WP_003229274.1 UDP-N-acetylmuramate--L-alanine ligase -

Sequence


Protein


Download         Length: 334 a.a.        Molecular weight: 36882.30 Da        Isoelectric Point: 5.1356

>NTDB_id=347765 GII78_RS16045 WP_069703823.1 3052903..3053907(-) (ccpA) [Bacillus subtilis strain MB8_B10]
MSNITIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIERLGYRPNAVARGLASKKTTTVGVIIPDISSIFYSELA
RGIEDIATMYKYNIILSNSDQNMEKELHLLNTMLGKQVDGIVFMGGNITDEHVAEFKRSPVPIVLAASVEEQEETPSVAI
DYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPFNEQFVAEGDYTYGSGLEALQHLMSLDKK
PTAILSATDEMALGIIHAAQDQGLSIPEDLDIIGFDNTRLSLMVRPQLSTVVQPTYDIGAVAMRLLTKLMNKEPVEEHIV
ELPHRIELRKSTKS

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=347765 GII78_RS16045 WP_069703823.1 3052903..3053907(-) (ccpA) [Bacillus subtilis strain MB8_B10]
ATGAGCAATATTACGATCTACGATGTAGCGAGAGAAGCTAATGTAAGCATGGCAACCGTTTCCCGTGTCGTGAACGGCAA
CCCGAATGTAAAACCGACAACGAGAAAAAAAGTCTTGGAAGCCATTGAACGTCTCGGTTACCGTCCAAACGCGGTGGCAA
GAGGGCTGGCAAGTAAAAAAACAACAACTGTAGGTGTCATCATTCCCGATATCTCAAGCATTTTCTATTCAGAGCTTGCG
CGCGGAATTGAAGATATCGCGACAATGTATAAATACAATATTATTTTGAGCAACTCTGACCAAAACATGGAGAAAGAGCT
GCACTTGTTAAACACAATGCTCGGCAAACAAGTGGACGGCATCGTGTTTATGGGCGGAAACATTACGGACGAGCATGTGG
CGGAATTTAAGCGTTCTCCAGTGCCGATTGTACTTGCCGCTTCTGTAGAAGAGCAGGAGGAAACACCGTCAGTCGCTATC
GATTACGAACAGGCGATTTATGATGCCGTGAAGCTTTTGGTTGATAAAGGACATACAGACATCGCGTTCGTTTCCGGACC
AATGGCAGAACCGATCAACCGTTCGAAAAAACTCCAAGGCTACAAACGTGCGCTTGAAGAAGCGAACCTTCCGTTTAATG
AACAATTTGTAGCTGAAGGGGATTACACATATGGTTCCGGACTCGAAGCACTGCAGCATCTGATGAGCCTGGATAAAAAA
CCGACAGCCATTCTTTCTGCAACTGATGAAATGGCACTCGGCATTATCCATGCCGCTCAGGATCAGGGCTTATCCATTCC
GGAGGATCTCGACATTATCGGTTTTGATAATACAAGATTAAGCCTCATGGTTCGTCCTCAGCTTTCAACAGTTGTTCAGC
CGACATATGATATCGGCGCCGTTGCGATGAGACTGCTGACGAAGCTCATGAATAAAGAGCCGGTTGAAGAGCATATCGTC
GAACTGCCGCACCGTATAGAGCTTAGAAAGTCAACCAAGTCATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

54.242

98.802

0.536

  ccpA Streptococcus gordonii str. Challis substr. CH1

53.333

98.802

0.527

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

50.602

99.401

0.503


Multiple sequence alignment