Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   EYC56_RS19780 Genome accession   NZ_CP036255
Coordinates   4216532..4217665 (+) Length   377 a.a.
NCBI ID   WP_131074547.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain BB151-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4211532..4222665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC56_RS19755 (EYC56_19755) - 4211705..4212901 (-) 1197 WP_131085354.1 cystathionine gamma-synthase -
  EYC56_RS19760 (EYC56_19760) - 4212992..4214362 (-) 1371 WP_053503913.1 pyridoxal-phosphate dependent enzyme -
  EYC56_RS19765 (EYC56_19765) - 4214603..4214821 (-) 219 WP_003484103.1 YdcH family protein -
  EYC56_RS19770 (EYC56_19770) - 4215163..4216053 (-) 891 WP_113255765.1 hypothetical protein -
  EYC56_RS19775 (EYC56_19775) - 4216050..4216433 (-) 384 WP_033003790.1 DUF4398 domain-containing protein -
  EYC56_RS19780 (EYC56_19780) pilU 4216532..4217665 (+) 1134 WP_131074547.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  EYC56_RS19785 (EYC56_19785) maiA 4218005..4218667 (-) 663 WP_053503917.1 maleylacetoacetate isomerase -
  EYC56_RS19790 (EYC56_19790) - 4218711..4219769 (-) 1059 WP_207306722.1 fumarylacetoacetate hydrolase family protein -
  EYC56_RS19800 (EYC56_19800) - 4220078..4221463 (+) 1386 WP_131074543.1 DEAD/DEAH box helicase -
  EYC56_RS19810 (EYC56_19810) queD 4221878..4222231 (+) 354 WP_008576903.1 6-carboxytetrahydropterin synthase QueD -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 41806.21 Da        Isoelectric Point: 6.2391

>NTDB_id=347715 EYC56_RS19780 WP_131074547.1 4216532..4217665(+) (pilU) [Xanthomonas oryzae strain BB151-3]
MDIGYFLKLMTEKNASDMFLTTGAPVYIKIEGKLYPLGNTGLPPGMVKKIAYSLMDEGQVPQFERELELNMAIALPDAGR
FRVNVFKQRGEVGMVIRAIRSRIPSIEELHLPQVLKDIILTPRGLVLVVGSTGSGKSTSLAAMIDHRNGTTTGHILTIED
PIEYLHKHKMSIVNQREVGLDTHAFQSALKNAMREAPDVILIGEILDAETMEAAIAFAETGHLCLATLHSNNADQTIERI
LNFFPESAHKNVLMNLALNLRAVISQRLVKGLDGRRRPATEVLLNTPMIRDLLRRGQVHEVKQAMEESLEEGMQTFDQCL
FRMVKSGEIEQEEALRAADSRDGLALKFRLSEGGSGEHDPYADYETPAAPKISHGFL

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=347715 EYC56_RS19780 WP_131074547.1 4216532..4217665(+) (pilU) [Xanthomonas oryzae strain BB151-3]
ATGGATATCGGCTACTTCTTGAAGCTGATGACCGAAAAGAATGCTTCGGACATGTTCTTGACCACCGGCGCGCCGGTGTA
CATCAAGATCGAAGGCAAGCTTTACCCGCTCGGCAATACGGGATTGCCGCCGGGGATGGTCAAGAAAATCGCTTACTCAT
TGATGGACGAGGGCCAGGTGCCGCAGTTCGAGCGCGAGCTCGAACTCAACATGGCCATCGCTCTGCCCGACGCCGGCCGC
TTCCGCGTGAACGTGTTCAAACAGCGCGGCGAGGTAGGTATGGTGATCCGTGCCATTCGCAGCCGGATCCCCAGCATCGA
AGAGCTCCACCTGCCACAGGTGCTCAAGGACATCATCTTGACCCCGCGCGGGCTGGTGCTGGTGGTGGGCTCGACCGGCT
CGGGCAAGTCGACCTCGCTTGCCGCGATGATCGACCACCGCAACGGCACCACCACCGGGCACATCCTCACCATCGAGGAC
CCGATCGAATATCTGCACAAGCACAAGATGTCGATCGTGAACCAGCGCGAGGTGGGCCTGGATACCCATGCTTTCCAGAG
CGCGCTGAAGAACGCGATGCGCGAGGCGCCGGACGTGATCCTGATCGGCGAGATCCTGGACGCCGAGACCATGGAGGCAG
CGATCGCCTTCGCCGAAACCGGCCACCTGTGCCTGGCCACGCTGCACTCCAACAATGCCGACCAGACCATCGAGCGTATC
CTCAATTTCTTCCCGGAAAGCGCGCACAAGAACGTGCTGATGAACCTGGCGCTCAACCTGCGCGCGGTCATCTCCCAGCG
TCTGGTCAAGGGCCTGGACGGCCGTCGCCGCCCGGCCACCGAAGTGCTGCTCAATACGCCGATGATCCGCGACCTGCTAC
GCCGCGGCCAGGTGCACGAGGTCAAGCAGGCGATGGAAGAGTCGCTGGAAGAAGGCATGCAGACCTTCGACCAGTGCCTG
TTCCGCATGGTGAAGTCGGGCGAAATCGAGCAGGAAGAAGCGCTGCGTGCCGCCGATTCGCGCGATGGCCTGGCGCTGAA
GTTCCGTCTCTCCGAAGGCGGCTCCGGCGAGCACGACCCGTACGCGGATTACGAAACGCCGGCTGCGCCGAAGATCAGCC
ACGGGTTTCTTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(81-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

52.646

95.225

0.501
  pilU Vibrio cholerae strain A1552

49.722

95.491

0.475
  pilU Acinetobacter baylyi ADP1

49.435

93.899

0.464
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.455

99.204

0.451
  pilT Pseudomonas aeruginosa PAK

43.195

89.655

0.387
  pilT Acinetobacter baumannii strain A118

42.308

89.655

0.379
  pilT Acinetobacter nosocomialis M2

42.308

89.655

0.379
  pilT Acinetobacter baumannii D1279779

42.308

89.655

0.379
  pilT Acinetobacter baylyi ADP1

41.765

90.186

0.377
  pilT Pseudomonas stutzeri DSM 10701

42.012

89.655

0.377
  pilT Neisseria meningitidis 8013

40.058

92.042

0.369
  pilT Neisseria gonorrhoeae MS11

40.058

92.042

0.369
  pilT Vibrio cholerae strain A1552

41.742

88.329

0.369
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

41.742

88.329

0.369
  pilT Legionella pneumophila strain ERS1305867

41.124

89.655

0.369
  pilT Legionella pneumophila strain Lp02

41.124

89.655

0.369

Multiple sequence alignment