Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EYC55_RS05950 Genome accession   NZ_CP036254
Coordinates   1241451..1241864 (+) Length   137 a.a.
NCBI ID   WP_131077924.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain BB156-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1236451..1246864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC55_RS05930 (EYC55_05930) - 1236794..1238128 (+) 1335 WP_053502793.1 HAMP domain-containing sensor histidine kinase -
  EYC55_RS05935 (EYC55_05935) coaE 1238348..1238953 (-) 606 WP_131074738.1 dephospho-CoA kinase -
  EYC55_RS05940 (EYC55_05940) - 1238967..1239830 (-) 864 WP_131077923.1 A24 family peptidase -
  EYC55_RS05945 (EYC55_05945) pilC 1239837..1241096 (-) 1260 WP_131076128.1 type II secretion system F family protein Machinery gene
  EYC55_RS05950 (EYC55_05950) pilA 1241451..1241864 (+) 414 WP_131077924.1 pilin Machinery gene
  EYC55_RS05955 (EYC55_05955) - 1242083..1243594 (+) 1512 WP_341273072.1 phosphoethanolamine transferase -
  EYC55_RS05960 (EYC55_05960) - 1243665..1244240 (+) 576 WP_242629270.1 hypothetical protein -
  EYC55_RS05965 (EYC55_05965) - 1244210..1245736 (+) 1527 WP_131083483.1 hypothetical protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14167.34 Da        Isoelectric Point: 8.4866

>NTDB_id=347685 EYC55_RS05950 WP_131077924.1 1241451..1241864(+) (pilA) [Xanthomonas oryzae strain BB156-2]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSEMAVLASGAKATIGENIANENAINTNACRGVATFNTATTN
TASLACSNGTVTVTGTTKASSVVLTYMPVLVDAGIKWTCSSSSPAKYLPAECRGSGT

Nucleotide


Download         Length: 414 bp        

>NTDB_id=347685 EYC55_RS05950 WP_131077924.1 1241451..1241864(+) (pilA) [Xanthomonas oryzae strain BB156-2]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCTGCCATCGCGCT
GCCGGCTTATCAGGATTACACCATCCGCTCGCGTGTCTCTGAAATGGCTGTGCTTGCCTCGGGTGCCAAGGCGACGATTG
GTGAGAATATCGCCAATGAGAATGCGATCAATACTAATGCGTGCCGCGGCGTTGCTACGTTTAATACCGCCACGACAAAT
ACTGCTTCCCTGGCGTGTTCCAACGGTACTGTCACTGTCACTGGTACGACTAAGGCTTCGAGCGTCGTTCTGACCTACAT
GCCGGTCCTTGTGGACGCTGGTATCAAGTGGACCTGTTCCTCTTCCAGCCCAGCTAAGTACCTGCCGGCCGAATGCCGCG
GTTCGGGCACCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

43.558

100

0.518
  comP Acinetobacter baylyi ADP1

47.619

100

0.511
  pilA2 Legionella pneumophila str. Paris

49.63

98.54

0.489
  pilA2 Legionella pneumophila strain ERS1305867

48.889

98.54

0.482
  pilE Neisseria gonorrhoeae strain FA1090

37.013

100

0.416
  pilA/pilAI Pseudomonas stutzeri DSM 10701

39.286

100

0.401
  pilA Vibrio parahaemolyticus RIMD 2210633

41.985

95.62

0.401
  pilA Acinetobacter baumannii strain A118

39.007

100

0.401
  pilA/pilA1 Eikenella corrodens VA1

35.762

100

0.394
  pilA Vibrio cholerae strain A1552

35.065

100

0.394
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

35.065

100

0.394
  pilA Vibrio cholerae C6706

35.065

100

0.394
  pilA Haemophilus influenzae 86-028NP

37.5

100

0.394
  pilA Haemophilus influenzae Rd KW20

38.129

100

0.387
  pilA/pilAII Pseudomonas stutzeri DSM 10701

34.459

100

0.372

Multiple sequence alignment