Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EYC55_RS05945 Genome accession   NZ_CP036254
Coordinates   1239837..1241096 (-) Length   419 a.a.
NCBI ID   WP_131076128.1    Uniprot ID   -
Organism   Xanthomonas oryzae strain BB156-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1234837..1246096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYC55_RS05920 (EYC55_05920) - 1235185..1235574 (+) 390 WP_131083478.1 hypothetical protein -
  EYC55_RS05925 (EYC55_05925) - 1235652..1236329 (+) 678 WP_003490678.1 response regulator transcription factor -
  EYC55_RS05930 (EYC55_05930) - 1236794..1238128 (+) 1335 WP_053502793.1 HAMP domain-containing sensor histidine kinase -
  EYC55_RS05935 (EYC55_05935) coaE 1238348..1238953 (-) 606 WP_131074738.1 dephospho-CoA kinase -
  EYC55_RS05940 (EYC55_05940) - 1238967..1239830 (-) 864 WP_131077923.1 A24 family peptidase -
  EYC55_RS05945 (EYC55_05945) pilC 1239837..1241096 (-) 1260 WP_131076128.1 type II secretion system F family protein Machinery gene
  EYC55_RS05950 (EYC55_05950) pilA 1241451..1241864 (+) 414 WP_131077924.1 pilin Machinery gene
  EYC55_RS05955 (EYC55_05955) - 1242083..1243594 (+) 1512 WP_341273072.1 phosphoethanolamine transferase -
  EYC55_RS05960 (EYC55_05960) - 1243665..1244240 (+) 576 WP_242629270.1 hypothetical protein -
  EYC55_RS05965 (EYC55_05965) - 1244210..1245736 (+) 1527 WP_131083483.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46103.62 Da        Isoelectric Point: 10.2301

>NTDB_id=347684 EYC55_RS05945 WP_131076128.1 1239837..1241096(-) (pilC) [Xanthomonas oryzae strain BB156-2]
MSVARSAIKKQPVDRNTSMLQTFVWEGADKRGVKMKGEQQARNANMLRAELRRQGIVPSMVKQKPKPLLGAAGKKITPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKALFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSFVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=347684 EYC55_RS05945 WP_131076128.1 1239837..1241096(-) (pilC) [Xanthomonas oryzae strain BB156-2]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACAAGCATGCTGCAGACCTTCGTTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGCAAGCCCGTAACGCCAATATGTTGCGGGCAGAACTGCGCCGTC
AGGGCATTGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGCTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAC
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCACTGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTTTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTGATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCCGTTTTCAGGATGCGGGACGATGTGTCTGTAGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTATTCAAAGTGGCTGAATACTTTG
AGGAGGAGGTCAATAATGCCGTGGATGCACTCAGCAGTCTGCTTGAACCACTGATCATGGTGTTCATTGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.202

96.897

0.516
  pilC Pseudomonas stutzeri DSM 10701

53.283

94.511

0.504
  pilC Acinetobacter baumannii D1279779

50.617

96.659

0.489
  pilC Acinetobacter baylyi ADP1

50.37

96.659

0.487
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.75

95.465

0.408
  pilC Vibrio cholerae strain A1552

41

95.465

0.391
  pilC Vibrio campbellii strain DS40M4

39.12

97.613

0.382

Multiple sequence alignment