Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EYR27_RS15410 Genome accession   NZ_CP036251
Coordinates   3374528..3374941 (-) Length   137 a.a.
NCBI ID   WP_019302546.1    Uniprot ID   A0AAP1EWJ8
Organism   Xanthomonas oryzae strain X11-5A     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3369528..3379941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYR27_RS15395 (EYR27_15395) - 3370657..3372183 (-) 1527 WP_019302549.1 membrane protein -
  EYR27_RS15400 (EYR27_15400) - 3372153..3372788 (-) 636 WP_230079411.1 hypothetical protein -
  EYR27_RS15405 (EYR27_15405) - 3372799..3374361 (-) 1563 WP_019302547.1 phosphoethanolamine transferase -
  EYR27_RS15410 (EYR27_15410) pilA 3374528..3374941 (-) 414 WP_019302546.1 pilin Machinery gene
  EYR27_RS15415 (EYR27_15415) pilC 3375295..3376554 (+) 1260 WP_029217767.1 type II secretion system F family protein Machinery gene
  EYR27_RS15420 (EYR27_15420) - 3376561..3377424 (+) 864 WP_019302544.1 A24 family peptidase -
  EYR27_RS15425 (EYR27_15425) coaE 3377438..3378049 (+) 612 WP_019302543.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14132.28 Da        Isoelectric Point: 8.4883

>NTDB_id=347638 EYR27_RS15410 WP_019302546.1 3374528..3374941(-) (pilA) [Xanthomonas oryzae strain X11-5A]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRSRVSEMAVLASGAKATIGENVANENAINTNACRGVATFTTPTTN
TASLACASGVITVTGTAKAATVNLTYTPTLVDAGIRWTCSSTSPAKYLPAECRGSGT

Nucleotide


Download         Length: 414 bp        

>NTDB_id=347638 EYR27_RS15410 WP_019302546.1 3374528..3374941(-) (pilA) [Xanthomonas oryzae strain X11-5A]
ATGAAGAAGCAGCAAGGCTTTACACTTATCGAACTGATGATCGTGGTCGCGATCATCGCCATCCTGGCCGCCATCGCGCT
GCCGGCTTACCAGGATTACACCATCCGCTCGCGTGTCTCTGAAATGGCTGTGCTCGCCTCCGGTGCCAAGGCGACGATTG
GTGAGAATGTTGCCAATGAGAATGCGATCAATACTAATGCGTGTCGCGGAGTTGCGACGTTTACGACCCCCACGACAAAT
ACTGCTTCCCTGGCGTGTGCCAGTGGCGTTATCACTGTCACTGGTACGGCTAAGGCGGCGACCGTCAATCTGACCTACAC
TCCGACCCTTGTGGACGCTGGCATCCGGTGGACCTGTTCGTCTACCAGCCCGGCTAAGTACCTGCCGGCCGAATGCCGCG
GTTCGGGCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

45.399

100

0.54
  pilA2 Legionella pneumophila str. Paris

52.206

99.27

0.518
  pilA2 Legionella pneumophila strain ERS1305867

51.471

99.27

0.511
  comP Acinetobacter baylyi ADP1

46.939

100

0.504
  pilA/pilAI Pseudomonas stutzeri DSM 10701

43.571

100

0.445
  pilA Acinetobacter baumannii strain A118

40.972

100

0.431
  pilA Haemophilus influenzae Rd KW20

40.845

100

0.423
  pilE Neisseria gonorrhoeae strain FA1090

37.013

100

0.416
  pilA Haemophilus influenzae 86-028NP

40

100

0.409
  pilA Vibrio cholerae strain A1552

34.416

100

0.387
  pilA Vibrio parahaemolyticus RIMD 2210633

36.806

100

0.387
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.416

100

0.387
  pilA Vibrio cholerae C6706

34.416

100

0.387
  pilA/pilA1 Eikenella corrodens VA1

35.333

100

0.387
  pilA/pilAII Pseudomonas stutzeri DSM 10701

36.232

100

0.365

Multiple sequence alignment