Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EYR27_RS15415 Genome accession   NZ_CP036251
Coordinates   3375295..3376554 (+) Length   419 a.a.
NCBI ID   WP_029217767.1    Uniprot ID   A0AAP0ZIP2
Organism   Xanthomonas oryzae strain X11-5A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3370295..3381554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYR27_RS15395 (EYR27_15395) - 3370657..3372183 (-) 1527 WP_019302549.1 membrane protein -
  EYR27_RS15400 (EYR27_15400) - 3372153..3372788 (-) 636 WP_230079411.1 hypothetical protein -
  EYR27_RS15405 (EYR27_15405) - 3372799..3374361 (-) 1563 WP_019302547.1 phosphoethanolamine transferase -
  EYR27_RS15410 (EYR27_15410) pilA 3374528..3374941 (-) 414 WP_019302546.1 pilin Machinery gene
  EYR27_RS15415 (EYR27_15415) pilC 3375295..3376554 (+) 1260 WP_029217767.1 type II secretion system F family protein Machinery gene
  EYR27_RS15420 (EYR27_15420) - 3376561..3377424 (+) 864 WP_019302544.1 A24 family peptidase -
  EYR27_RS15425 (EYR27_15425) coaE 3377438..3378049 (+) 612 WP_019302543.1 dephospho-CoA kinase -
  EYR27_RS15440 (EYR27_15440) - 3379897..3380250 (-) 354 WP_003483889.1 PilZ domain-containing protein -
  EYR27_RS15445 (EYR27_15445) - 3380247..3381206 (-) 960 WP_019302028.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46002.47 Da        Isoelectric Point: 10.2301

>NTDB_id=347639 EYR27_RS15415 WP_029217767.1 3375295..3376554(+) (pilC) [Xanthomonas oryzae strain X11-5A]
MSVTRSAIKKQPVDRNTSMLQTFVWEGADKRGVKMKGEQPARNANMLRAELRRQGIVPSMVKQKPKPLFGGAGKKISPKD
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVASYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLVVAVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEEEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=347639 EYR27_RS15415 WP_029217767.1 3375295..3376554(+) (pilC) [Xanthomonas oryzae strain X11-5A]
ATGTCAGTCACGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGGAACACAAGCATGCTGCAGACCTTCGTTTGGGAAGG
AGCTGACAAGCGTGGCGTAAAGATGAAGGGAGAGCAGCCAGCTCGTAACGCCAATATGTTGCGGGCAGAACTGCGCCGTC
AGGGCATTGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTTGGAGGGGCGGGGAAGAAAATTTCCCCAAAAGAC
ATTGCGTTCTTTAGTCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGACATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTACCGCAACCTCGTCCGCGCGGGTGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTAGCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGGTGGTCGCAGTTGGATCTGTCGTTGGCTTTATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTCGA
TCGATTGATCCTCAAGGTGCCCGTCATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCGCTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAGGAA
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTGAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCGCTTGATGCAATGCTATTCAAAGTGGCTGAATACTTTG
AGGAGGAGGTCAATAATGCCGTGGATGCACTCAGCAGTCTGCTTGAACCACTGATCATGGTGTTCATTGGGACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.709

96.897

0.511
  pilC Pseudomonas stutzeri DSM 10701

53.535

94.511

0.506
  pilC Acinetobacter baylyi ADP1

51.111

96.659

0.494
  pilC Acinetobacter baumannii D1279779

50.617

96.659

0.489
  pilG Neisseria gonorrhoeae MS11

43.176

96.181

0.415
  pilG Neisseria meningitidis 44/76-A

42.68

96.181

0.411
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

38.75

95.465

0.37

Multiple sequence alignment