Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   SPC_RS15735 Genome accession   NC_012125
Coordinates   3197650..3198630 (-) Length   326 a.a.
NCBI ID   WP_001055661.1    Uniprot ID   A0A5C2LVV2
Organism   Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3192650..3203630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPC_RS15705 (SPC_3158) endA 3193108..3193815 (+) 708 WP_000286134.1 deoxyribonuclease I -
  SPC_RS15710 (SPC_3159) rsmE 3193892..3194623 (+) 732 WP_001222488.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  SPC_RS15715 (SPC_3160) gshB 3194643..3195590 (+) 948 WP_000593243.1 glutathione synthase -
  SPC_RS15720 (SPC_3161) - 3195806..3196369 (+) 564 WP_001053171.1 YqgE/AlgH family protein -
  SPC_RS15725 (SPC_3162) ruvX 3196369..3196785 (+) 417 WP_001285491.1 Holliday junction resolvase RuvX -
  SPC_RS15730 (SPC_3163) - 3196832..3197518 (-) 687 WP_000098341.1 IclR family transcriptional regulator -
  SPC_RS15735 (SPC_3164) pilT 3197650..3198630 (-) 981 WP_001055661.1 type IV pilus twitching motility protein PilT Machinery gene
  SPC_RS15740 (SPC_3165) - 3198648..3199352 (+) 705 WP_000997812.1 YggS family pyridoxal phosphate-dependent enzyme -
  SPC_RS15745 (SPC_3166) - 3199371..3199937 (+) 567 WP_001094848.1 YggT family protein -
  SPC_RS15750 (SPC_3167) yggU 3199934..3200224 (+) 291 WP_001277204.1 DUF167 family protein YggU -
  SPC_RS15755 (SPC_3168) - 3200232..3200825 (+) 594 WP_001174767.1 XTP/dITP diphosphatase -
  SPC_RS15760 (SPC_3169) hemW 3200818..3201954 (+) 1137 WP_001096537.1 radical SAM family heme chaperone HemW -
  SPC_RS15765 (SPC_3170) - 3202046..3203053 (-) 1008 WP_000252192.1 DUF1202 domain-containing protein -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36168.35 Da        Isoelectric Point: 7.5116

>NTDB_id=33055 SPC_RS15735 WP_001055661.1 3197650..3198630(-) (pilT) [Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594]
MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMETAPFTAPDVDRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRA
SAFTHQQGTSLALRLLPERCPDLAEIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGYLNQHADKHILTLEDPIE
YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDS
FPAQEKEPVRSQLASSLRAVLSQKLEVDRQDGRVALFELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWR
QAQGRL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=33055 SPC_RS15735 WP_001055661.1 3197650..3198630(-) (pilT) [Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594]
ATGAATATGGAAGAAATTGTGACGCTTAGTGTAAAGCATAACGTCTCGGATCTACACCTGTGTAACGCCTGGCCTGCGCG
ATGGCGCAAACAAGGACGCATGGAGACAGCGCCTTTTACCGCGCCTGATGTCGACAGGCTTCTGCTTGATTGGCTTAATG
ATGCGCAACAATATCAGTGGCGAACGCACGGCCAGCTTGATTTCGCCGTCTCGCTGTCTGGCACGCGGCGCCTGCGCGCC
AGTGCGTTCACACATCAACAGGGAACGTCGCTGGCGTTACGGCTATTGCCCGAGCGTTGTCCTGATCTGGCGGAAATCCA
GACGCCGCCGATAGTACCCGCACTGCTTGCCAGCGAGAACGGACTGATTCTGGTCACTGGCGCTACTGGCTGCGGGAAAT
CCACCACGCTGGCGGCGATGGTGGGATATCTTAATCAACATGCCGATAAACACATCCTGACGCTGGAAGATCCTATTGAG
TACCGTTACACCAGCAAGCGTTGCCTGATACAGCAGCGGGAAATCGGCCAGCATTGCGCCACTTTTGCCGCCGGGCTGCG
CGCAGCGTTGCGTGAAGATCCCGATGTCATTTTGCTGGGAGAGCTGCGTGACAGCGAGACCATTCGCCTGGCGCTGACGG
CGGCGGAAACGGGGCATCTGGTACTGGCAACCCTGCATACTCGCGGTGCGGCGCAGGCGGTGGAAAGATTAGTGGATAGT
TTTCCGGCGCAGGAAAAAGAACCGGTACGCAGCCAACTGGCGAGTAGTCTGCGCGCCGTACTATCACAAAAACTGGAGGT
CGACAGACAGGATGGGCGCGTGGCGTTGTTTGAATTACTGATTAATACGCCAGCCACAGGGAATTTGATCCGTGAAGGCA
AACTCCATCAGTTGGCCCACGTGATACAAACCGGGCAGCAGCAGGGGATGATGACATTCGCCCAGAGCGCGCAATGGCGT
CAGGCGCAGGGACGACTGTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(77-263)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C2LVV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

48.93

100

0.491
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

48.93

100

0.491
  pilT Neisseria meningitidis 8013

47.561

100

0.479
  pilT Neisseria gonorrhoeae MS11

47.256

100

0.475
  pilT Acinetobacter baylyi ADP1

45.566

100

0.457
  pilT Pseudomonas aeruginosa PAK

45.26

100

0.454
  pilT Acinetobacter baumannii D1279779

45.26

100

0.454
  pilT Acinetobacter baumannii strain A118

45.26

100

0.454
  pilT Pseudomonas stutzeri DSM 10701

45.26

100

0.454
  pilT Acinetobacter nosocomialis M2

44.954

100

0.451
  pilT Legionella pneumophila strain ERS1305867

44.969

97.546

0.439
  pilT Legionella pneumophila strain Lp02

44.969

97.546

0.439
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.824

97.546

0.408
  pilU Vibrio cholerae strain A1552

38.871

97.853

0.38
  pilU Pseudomonas stutzeri DSM 10701

35.952

100

0.365
  pilU Acinetobacter baylyi ADP1

36.533

99.08

0.362

Multiple sequence alignment