Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | BAMF_RS30075 | Genome accession | NC_014551 |
| Coordinates | 1942467..1942829 (+) | Length | 120 a.a. |
| NCBI ID | WP_013352421.1 | Uniprot ID | A0A9P1JH52 |
| Organism | Bacillus amyloliquefaciens DSM 7 = ATCC 23350 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1937467..1947829
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAMF_RS30045 (BAMF_1874) | - | 1937924..1938157 (+) | 234 | WP_003153997.1 | DUF896 domain-containing protein | - |
| BAMF_RS30050 (BAMF_1875) | recP/tkt | 1938324..1940327 (+) | 2004 | WP_013352417.1 | transketolase | Machinery gene |
| BAMF_RS30055 (BAMF_1876) | sirA | 1940478..1940924 (+) | 447 | WP_013352418.1 | sporulation inhibitor of replication protein SirA | - |
| BAMF_RS30060 (BAMF_1877) | - | 1941010..1941228 (+) | 219 | WP_003153994.1 | YneF family protein | - |
| BAMF_RS30065 (BAMF_1878) | - | 1941300..1941473 (-) | 174 | WP_088030684.1 | aspartyl-phosphate phosphatase Spo0E family protein | - |
| BAMF_RS30070 (BAMF_1879) | - | 1941675..1942382 (+) | 708 | WP_088030531.1 | cytochrome c biogenesis protein CcdA | - |
| BAMF_RS30075 (BAMF_1880) | pilH | 1942467..1942829 (+) | 363 | WP_013352421.1 | response regulator | Machinery gene |
| BAMF_RS30080 (BAMF_1881) | - | 1942909..1943400 (+) | 492 | WP_088030532.1 | CcdC family protein | - |
| BAMF_RS30085 (BAMF_1882) | - | 1943428..1943856 (-) | 429 | WP_013352423.1 | DUF2621 domain-containing protein | - |
| BAMF_RS30090 (BAMF_1883) | - | 1944091..1944462 (-) | 372 | WP_013352424.1 | spore coat protein | - |
| BAMF_RS30095 (BAMF_1884) | - | 1944556..1944702 (-) | 147 | WP_003153984.1 | small acid-soluble spore protein P | - |
| BAMF_RS30100 (BAMF_1885) | sspO | 1944732..1944878 (-) | 147 | WP_003153982.1 | acid-soluble spore protein SspO | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13259.62 Da Isoelectric Point: 5.2063
>NTDB_id=32972 BAMF_RS30075 WP_013352421.1 1942467..1942829(+) (pilH) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
MTRVLVVDDAKFMRVKIREILESANYIVAGEAADGEEALAVYQKIRPDLVTMDITMPVKNGIQALQDILAFDPKAHVIMC
TAMRQQRIVLEAIELGAKDFIVKPFEASKVLEAVGRVTGT
MTRVLVVDDAKFMRVKIREILESANYIVAGEAADGEEALAVYQKIRPDLVTMDITMPVKNGIQALQDILAFDPKAHVIMC
TAMRQQRIVLEAIELGAKDFIVKPFEASKVLEAVGRVTGT
Nucleotide
Download Length: 363 bp
>NTDB_id=32972 BAMF_RS30075 WP_013352421.1 1942467..1942829(+) (pilH) [Bacillus amyloliquefaciens DSM 7 = ATCC 23350]
ATGACACGAGTTTTAGTTGTAGATGACGCCAAGTTCATGAGGGTGAAAATCAGAGAAATTCTGGAATCGGCGAATTACAT
AGTGGCCGGAGAAGCGGCTGACGGCGAGGAAGCCCTGGCGGTATATCAAAAAATCCGTCCCGACCTGGTGACAATGGATA
TTACCATGCCGGTCAAAAACGGTATACAGGCGCTGCAGGATATTTTAGCTTTTGACCCGAAAGCCCATGTCATCATGTGC
ACGGCCATGCGGCAGCAGCGGATTGTTCTGGAAGCGATTGAATTAGGCGCTAAAGACTTTATCGTTAAACCGTTTGAAGC
TTCTAAAGTGCTGGAGGCAGTAGGCAGGGTGACGGGAACGTAA
ATGACACGAGTTTTAGTTGTAGATGACGCCAAGTTCATGAGGGTGAAAATCAGAGAAATTCTGGAATCGGCGAATTACAT
AGTGGCCGGAGAAGCGGCTGACGGCGAGGAAGCCCTGGCGGTATATCAAAAAATCCGTCCCGACCTGGTGACAATGGATA
TTACCATGCCGGTCAAAAACGGTATACAGGCGCTGCAGGATATTTTAGCTTTTGACCCGAAAGCCCATGTCATCATGTGC
ACGGCCATGCGGCAGCAGCGGATTGTTCTGGAAGCGATTGAATTAGGCGCTAAAGACTTTATCGTTAAACCGTTTGAAGC
TTCTAAAGTGCTGGAGGCAGTAGGCAGGGTGACGGGAACGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
36.667 |
100 |
0.367 |