Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | GEOB_RS16775 | Genome accession | NC_011979 |
| Coordinates | 3727467..3728558 (-) | Length | 363 a.a. |
| NCBI ID | WP_012648444.1 | Uniprot ID | B9M532 |
| Organism | Geotalea daltonii FRC-32 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3722467..3733558
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GEOB_RS16760 (Geob_3370) | - | 3723132..3724505 (-) | 1374 | WP_012648441.1 | sigma-54 dependent transcriptional regulator | - |
| GEOB_RS16765 (Geob_3371) | - | 3724524..3726179 (-) | 1656 | WP_012648442.1 | nitrogen regulation protein NR(II) | - |
| GEOB_RS16770 (Geob_3372) | - | 3726181..3727398 (-) | 1218 | WP_012648443.1 | type II secretion system F family protein | - |
| GEOB_RS16775 (Geob_3373) | pilT | 3727467..3728558 (-) | 1092 | WP_012648444.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GEOB_RS16780 (Geob_3374) | pilB | 3728573..3730279 (-) | 1707 | WP_012648445.1 | type IV-A pilus assembly ATPase PilB | - |
| GEOB_RS16785 (Geob_3375) | aroE | 3730348..3731220 (-) | 873 | WP_012648446.1 | shikimate dehydrogenase | - |
| GEOB_RS16790 (Geob_3376) | - | 3731217..3733079 (-) | 1863 | WP_012648447.1 | protein O-mannosyl-transferase family | - |
Sequence
Protein
Download Length: 363 a.a. Molecular weight: 40503.69 Da Isoelectric Point: 7.2245
>NTDB_id=32808 GEOB_RS16775 WP_012648444.1 3727467..3728558(-) (pilT) [Geotalea daltonii FRC-32]
MANLHQLLKELVERGGSDLHITTNTPPQIRIDGKVTPMDFPPLTAIETKQLCYSILTDAQKHKFEEESELDLSFGVKGLS
RFRGNVFVQRGAVAGVFRVIPYKILTFEELGLPPVVKDLSERPRGLILVTGPTGSGKSTTLASIIDKINTDRHDHIITIE
DPIEYLHPHKGCLVNQREVGADTKSFKNALKYVLRQDPDIVLVGELRDLETIEAALTLAETGHLCFATLHTNSCAQTINR
IIDVFPPYQQTQVRTQLSFVLEGVLSQTLIPKMNGGGRALALEVMVPNPAIRNLIREDKVHQIYSQMQVGQDKFGMQTMN
QCLFTLYKRRIISVDDALGRSPEPDELKQMISAGAMQNAQRRS
MANLHQLLKELVERGGSDLHITTNTPPQIRIDGKVTPMDFPPLTAIETKQLCYSILTDAQKHKFEEESELDLSFGVKGLS
RFRGNVFVQRGAVAGVFRVIPYKILTFEELGLPPVVKDLSERPRGLILVTGPTGSGKSTTLASIIDKINTDRHDHIITIE
DPIEYLHPHKGCLVNQREVGADTKSFKNALKYVLRQDPDIVLVGELRDLETIEAALTLAETGHLCFATLHTNSCAQTINR
IIDVFPPYQQTQVRTQLSFVLEGVLSQTLIPKMNGGGRALALEVMVPNPAIRNLIREDKVHQIYSQMQVGQDKFGMQTMN
QCLFTLYKRRIISVDDALGRSPEPDELKQMISAGAMQNAQRRS
Nucleotide
Download Length: 1092 bp
>NTDB_id=32808 GEOB_RS16775 WP_012648444.1 3727467..3728558(-) (pilT) [Geotalea daltonii FRC-32]
ATGGCTAATTTACATCAATTACTGAAAGAACTGGTTGAGCGAGGTGGTTCGGACCTCCACATCACGACCAATACTCCACC
CCAGATAAGGATCGACGGCAAAGTCACCCCGATGGATTTTCCTCCGCTAACTGCCATCGAAACAAAACAACTCTGTTACA
GCATTCTCACTGATGCACAGAAACACAAATTCGAAGAAGAGAGCGAGCTGGATCTGTCCTTTGGCGTCAAAGGGCTGTCA
AGGTTCAGGGGCAATGTCTTCGTCCAGCGTGGCGCAGTGGCCGGGGTGTTCAGGGTCATTCCCTATAAAATTCTCACCTT
TGAGGAACTGGGCCTGCCGCCGGTCGTAAAGGACCTGTCCGAGCGGCCAAGAGGCTTGATCTTGGTTACCGGGCCTACCG
GCAGCGGCAAATCAACCACCCTTGCGTCAATCATCGACAAGATCAACACCGACCGTCACGATCATATCATCACCATTGAA
GACCCCATCGAGTACCTGCATCCCCACAAGGGGTGTCTGGTCAACCAGAGAGAGGTGGGGGCCGATACCAAAAGCTTCAA
AAATGCACTCAAATATGTGTTGCGCCAGGATCCTGATATTGTGCTTGTCGGTGAGCTGCGAGACCTTGAAACTATTGAAG
CGGCCTTGACCCTGGCCGAAACAGGTCATTTGTGTTTTGCTACTCTCCATACCAATTCCTGTGCCCAGACCATCAACCGC
ATCATAGATGTGTTTCCGCCTTATCAGCAAACCCAGGTAAGGACGCAACTCTCCTTCGTTCTTGAAGGAGTTCTGTCCCA
GACCCTCATCCCAAAAATGAACGGGGGAGGTAGAGCACTGGCCCTGGAGGTAATGGTGCCGAACCCGGCCATCCGCAACC
TGATCCGGGAAGATAAAGTACATCAGATCTATTCCCAGATGCAAGTAGGCCAGGACAAGTTCGGCATGCAGACCATGAAT
CAATGCCTGTTCACCCTTTATAAAAGACGTATCATATCCGTTGATGATGCTTTGGGAAGATCCCCTGAGCCGGATGAACT
GAAACAGATGATTTCTGCCGGCGCCATGCAAAATGCCCAACGGAGATCGTGA
ATGGCTAATTTACATCAATTACTGAAAGAACTGGTTGAGCGAGGTGGTTCGGACCTCCACATCACGACCAATACTCCACC
CCAGATAAGGATCGACGGCAAAGTCACCCCGATGGATTTTCCTCCGCTAACTGCCATCGAAACAAAACAACTCTGTTACA
GCATTCTCACTGATGCACAGAAACACAAATTCGAAGAAGAGAGCGAGCTGGATCTGTCCTTTGGCGTCAAAGGGCTGTCA
AGGTTCAGGGGCAATGTCTTCGTCCAGCGTGGCGCAGTGGCCGGGGTGTTCAGGGTCATTCCCTATAAAATTCTCACCTT
TGAGGAACTGGGCCTGCCGCCGGTCGTAAAGGACCTGTCCGAGCGGCCAAGAGGCTTGATCTTGGTTACCGGGCCTACCG
GCAGCGGCAAATCAACCACCCTTGCGTCAATCATCGACAAGATCAACACCGACCGTCACGATCATATCATCACCATTGAA
GACCCCATCGAGTACCTGCATCCCCACAAGGGGTGTCTGGTCAACCAGAGAGAGGTGGGGGCCGATACCAAAAGCTTCAA
AAATGCACTCAAATATGTGTTGCGCCAGGATCCTGATATTGTGCTTGTCGGTGAGCTGCGAGACCTTGAAACTATTGAAG
CGGCCTTGACCCTGGCCGAAACAGGTCATTTGTGTTTTGCTACTCTCCATACCAATTCCTGTGCCCAGACCATCAACCGC
ATCATAGATGTGTTTCCGCCTTATCAGCAAACCCAGGTAAGGACGCAACTCTCCTTCGTTCTTGAAGGAGTTCTGTCCCA
GACCCTCATCCCAAAAATGAACGGGGGAGGTAGAGCACTGGCCCTGGAGGTAATGGTGCCGAACCCGGCCATCCGCAACC
TGATCCGGGAAGATAAAGTACATCAGATCTATTCCCAGATGCAAGTAGGCCAGGACAAGTTCGGCATGCAGACCATGAAT
CAATGCCTGTTCACCCTTTATAAAAGACGTATCATATCCGTTGATGATGCTTTGGGAAGATCCCCTGAGCCGGATGAACT
GAAACAGATGATTTCTGCCGGCGCCATGCAAAATGCCCAACGGAGATCGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baylyi ADP1 |
53.353 |
94.49 |
0.504 |
| pilT | Pseudomonas aeruginosa PAK |
53.043 |
95.041 |
0.504 |
| pilT | Legionella pneumophila strain Lp02 |
54.985 |
91.185 |
0.501 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.985 |
91.185 |
0.501 |
| pilT | Acinetobacter baumannii D1279779 |
52.174 |
95.041 |
0.496 |
| pilT | Acinetobacter nosocomialis M2 |
52.174 |
95.041 |
0.496 |
| pilT | Acinetobacter baumannii strain A118 |
52.174 |
95.041 |
0.496 |
| pilT | Pseudomonas stutzeri DSM 10701 |
51.594 |
95.041 |
0.49 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.575 |
95.868 |
0.485 |
| pilT | Vibrio cholerae strain A1552 |
49.401 |
92.011 |
0.455 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
49.401 |
92.011 |
0.455 |
| pilT | Neisseria meningitidis 8013 |
46.707 |
92.011 |
0.43 |
| pilT | Neisseria gonorrhoeae MS11 |
46.246 |
91.736 |
0.424 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.33 |
96.97 |
0.41 |
| pilU | Vibrio cholerae strain A1552 |
40.822 |
100 |
0.41 |
| pilU | Acinetobacter baylyi ADP1 |
41.176 |
98.347 |
0.405 |