Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | EBN15_RS14140 | Genome accession | NZ_CP033326 |
| Coordinates | 3271328..3271735 (-) | Length | 135 a.a. |
| NCBI ID | WP_159407404.1 | Uniprot ID | - |
| Organism | Xanthomonas cucurbitae strain ATCC 23378 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3266328..3276735
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EBN15_RS14130 (EBN15_14190) | pilR | 3267254..3268645 (+) | 1392 | WP_167526932.1 | sigma-54 dependent transcriptional regulator | Regulator |
| EBN15_RS14135 (EBN15_14195) | pilB | 3269466..3271202 (-) | 1737 | WP_159407403.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EBN15_RS14140 (EBN15_14200) | pilA/pilAI | 3271328..3271735 (-) | 408 | WP_159407404.1 | pilin | Machinery gene |
| EBN15_RS14145 (EBN15_14205) | pilC | 3272089..3273342 (+) | 1254 | WP_159407405.1 | type II secretion system F family protein | Machinery gene |
| EBN15_RS14150 (EBN15_14210) | - | 3273349..3274212 (+) | 864 | WP_159407406.1 | A24 family peptidase | - |
| EBN15_RS14155 (EBN15_14215) | coaE | 3274226..3274831 (+) | 606 | WP_104604291.1 | dephospho-CoA kinase | - |
| EBN15_RS14160 (EBN15_14220) | - | 3275046..3276380 (-) | 1335 | WP_159407407.1 | HAMP domain-containing sensor histidine kinase | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 14017.05 Da Isoelectric Point: 8.4717
>NTDB_id=322978 EBN15_RS14140 WP_159407404.1 3271328..3271735(-) (pilA/pilAI) [Xanthomonas cucurbitae strain ATCC 23378]
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYVVKSQAASALAEITPGKVGFEQATNEGKTPSTTATDAGYIGVGGTTS
YCTVTVTANTIVCATRGGNATKFNGKNLTWTRDAATGLWSCGSDLDAKYKPGKCT
MKKQQGFTLIELMIVVAIIAILAAIALPAYQDYVVKSQAASALAEITPGKVGFEQATNEGKTPSTTATDAGYIGVGGTTS
YCTVTVTANTIVCATRGGNATKFNGKNLTWTRDAATGLWSCGSDLDAKYKPGKCT
Nucleotide
Download Length: 408 bp
>NTDB_id=322978 EBN15_RS14140 WP_159407404.1 3271328..3271735(-) (pilA/pilAI) [Xanthomonas cucurbitae strain ATCC 23378]
ATGAAGAAGCAGCAGGGTTTTACGCTGATCGAACTGATGATCGTTGTTGCGATCATTGCTATTCTGGCCGCCATCGCGCT
GCCGGCCTATCAGGACTATGTGGTCAAATCGCAGGCCGCTTCGGCGCTCGCTGAAATCACCCCGGGAAAGGTTGGTTTCG
AGCAGGCAACCAATGAAGGCAAGACTCCAAGCACCACCGCGACTGATGCGGGCTACATTGGTGTCGGCGGAACCACCTCT
TACTGCACGGTCACTGTGACTGCGAACACCATCGTTTGCGCGACTCGTGGCGGAAACGCAACGAAGTTTAACGGAAAGAA
CCTCACCTGGACGCGCGACGCCGCCACCGGTCTCTGGAGCTGTGGATCCGATCTGGATGCGAAGTACAAGCCTGGCAAGT
GCACCTAA
ATGAAGAAGCAGCAGGGTTTTACGCTGATCGAACTGATGATCGTTGTTGCGATCATTGCTATTCTGGCCGCCATCGCGCT
GCCGGCCTATCAGGACTATGTGGTCAAATCGCAGGCCGCTTCGGCGCTCGCTGAAATCACCCCGGGAAAGGTTGGTTTCG
AGCAGGCAACCAATGAAGGCAAGACTCCAAGCACCACCGCGACTGATGCGGGCTACATTGGTGTCGGCGGAACCACCTCT
TACTGCACGGTCACTGTGACTGCGAACACCATCGTTTGCGCGACTCGTGGCGGAAACGCAACGAAGTTTAACGGAAAGAA
CCTCACCTGGACGCGCGACGCCGCCACCGGTCTCTGGAGCTGTGGATCCGATCTGGATGCGAAGTACAAGCCTGGCAAGT
GCACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
69.63 |
100 |
0.696 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
61.654 |
98.519 |
0.607 |
| pilA | Pseudomonas aeruginosa PAK |
44 |
100 |
0.489 |
| pilA | Acinetobacter baumannii strain A118 |
44.056 |
100 |
0.467 |
| pilE | Neisseria gonorrhoeae MS11 |
36.709 |
100 |
0.43 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
43.939 |
97.778 |
0.43 |
| comP | Acinetobacter baylyi ADP1 |
39.31 |
100 |
0.422 |
| pilA | Vibrio cholerae C6706 |
39.437 |
100 |
0.415 |
| pilA | Vibrio cholerae strain A1552 |
39.437 |
100 |
0.415 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.437 |
100 |
0.415 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
34.177 |
100 |
0.4 |
| pilA2 | Legionella pneumophila str. Paris |
38.686 |
100 |
0.393 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
38.686 |
100 |
0.393 |