Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   EBN15_RS14130 Genome accession   NZ_CP033326
Coordinates   3267254..3268645 (+) Length   463 a.a.
NCBI ID   WP_167526932.1    Uniprot ID   -
Organism   Xanthomonas cucurbitae strain ATCC 23378     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3262254..3273645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBN15_RS14110 (EBN15_14170) - 3262500..3262892 (-) 393 WP_167526931.1 endonuclease domain-containing protein -
  EBN15_RS14115 (EBN15_14175) sucD 3263177..3264052 (-) 876 WP_104604276.1 succinate--CoA ligase subunit alpha -
  EBN15_RS14120 (EBN15_14180) sucC 3264077..3265246 (-) 1170 WP_104604278.1 ADP-forming succinate--CoA ligase subunit beta -
  EBN15_RS14125 (EBN15_14185) - 3265481..3267094 (+) 1614 WP_104604280.1 HAMP domain-containing sensor histidine kinase -
  EBN15_RS14130 (EBN15_14190) pilR 3267254..3268645 (+) 1392 WP_167526932.1 sigma-54 dependent transcriptional regulator Regulator
  EBN15_RS14135 (EBN15_14195) pilB 3269466..3271202 (-) 1737 WP_159407403.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EBN15_RS14140 (EBN15_14200) pilA/pilAI 3271328..3271735 (-) 408 WP_159407404.1 pilin Machinery gene
  EBN15_RS14145 (EBN15_14205) pilC 3272089..3273342 (+) 1254 WP_159407405.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 50167.66 Da        Isoelectric Point: 6.5834

>NTDB_id=322976 EBN15_RS14130 WP_167526932.1 3267254..3268645(+) (pilR) [Xanthomonas cucurbitae strain ATCC 23378]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEISKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGASTAMESLRATIAKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAPGPFIPVNCGAIPTELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGNLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGRLATGPGTAII
EPREAVVDIDPTSAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=322976 EBN15_RS14130 WP_167526932.1 3267254..3268645(+) (pilR) [Xanthomonas cucurbitae strain ATCC 23378]
ATGAACGAACCGAAAAGCGCCCTGGTCGTCGACGACGAACGCGACATCCGCGAACTGCTTGTTCTCACCCTGGGGCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAATCTGGCCGAAGCGCGCGAACTGCTGGCCAGCAACCCCTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCTCCAAGCATTACCCGCAGACACCGGTGGCG
ATGATTACCGCCTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTCAAGGCCGGCGCTTTCGACTTCGTCAGCAAGCCCGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCCCCGGCGCCGC
CGCCGGAGCAGGCCAGCCGCCTGCTCGGCGCCTCCACCGCGATGGAGAGCCTGCGCGCCACCATCGCCAAGGTCGCACGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTGGCGCGCACCATCCACGAGCAGGGCGC
ACGCGCCCCCGGGCCGTTCATTCCGGTCAATTGCGGCGCCATTCCCACCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCACATGCCGACAAGCCCGGCCTGTTCCAGGCCGCACATGGCGGCACCCTGTTCCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTATTGCGCGCGATCCAGGAAAAATCGGTACGCCCGGTTGGCGC
CTCCAGCGAATCGCTGGTCGATGTGCGCATCCTTTCGGCCACGCACAAGGACCTGGGCAACCTGGTCTCCGATGGCCGTT
TTCGGCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGGGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCTGCCATCATCGCGCGGCTGGCGCACAGCCATGGGCGGCCGATCCCGCTCTTGACGCCTTCGGCCCTGGA
CGCGCTGGACCAATACGGCTTCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCTCACGGCGGCCGCCTGGCAACCGGCCCCGGCACGGCCATCATC
GAACCGCGCGAAGCGGTGGTCGACATCGACCCCACCTCGGCCGCCCTGCCCTCCTACATCGAACAGCTCGAACGCGCCGC
AATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCCGGACCGCCGCCCAACTGGGCATCACGTTTCGCGCGCTGC
GTTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-460)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.181

99.136

0.626
  pilR Acinetobacter baumannii strain A118

49.567

99.784

0.495

Multiple sequence alignment