Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilT   Type   Machinery gene
Locus tag   KPK_RS03520 Genome accession   NC_011283
Coordinates   734788..735768 (+) Length   326 a.a.
NCBI ID   WP_012540564.1    Uniprot ID   A0A9P3P6S3
Organism   Klebsiella variicola     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 729788..740768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPK_RS03485 (KPK_0718) - 730324..730650 (+) 327 WP_012540559.1 YggL family protein -
  KPK_RS03490 (KPK_0719) - 730701..731420 (+) 720 WP_012540560.1 DUF2884 domain-containing protein -
  KPK_RS03495 (KPK_0720) hemW 731461..732597 (-) 1137 WP_012540561.1 radical SAM family heme chaperone HemW -
  KPK_RS03500 (KPK_0721) - 732590..733183 (-) 594 WP_012540562.1 XTP/dITP diphosphatase -
  KPK_RS03505 (KPK_0722) yggU 733196..733486 (-) 291 WP_002916614.1 DUF167 family protein YggU -
  KPK_RS03510 (KPK_0723) - 733483..734049 (-) 567 WP_004205182.1 YggT family protein -
  KPK_RS03515 (KPK_0724) - 734070..734771 (-) 702 WP_012540563.1 YggS family pyridoxal phosphate-dependent enzyme -
  KPK_RS03520 (KPK_0725) pilT 734788..735768 (+) 981 WP_012540564.1 type IV pilus twitching motility protein PilT Machinery gene
  KPK_RS03525 (KPK_0726) - 736117..736770 (+) 654 WP_004205179.1 LuxR family transcriptional regulator -
  KPK_RS03530 (KPK_0727) ruvX 736823..737239 (-) 417 WP_012540565.1 Holliday junction resolvase RuvX -
  KPK_RS03535 (KPK_0728) - 737239..737802 (-) 564 WP_012540566.1 YqgE/AlgH family protein -
  KPK_RS03540 (KPK_0729) gshB 737977..738927 (-) 951 WP_012540567.1 glutathione synthase -
  KPK_RS03545 (KPK_0730) rsmE 738948..739679 (-) 732 WP_008806461.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  KPK_RS03550 (KPK_0731) endA 739771..740478 (-) 708 WP_012540568.1 deoxyribonuclease I -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 35439.01 Da        Isoelectric Point: 6.7658

>NTDB_id=31568 KPK_RS03520 WP_012540564.1 734788..735768(+) (pilT) [Klebsiella variicola]
MKLEEIVALSVKHNVSDLHLCNSAAPRWRRQGKLEPAPFPAPDIPDLLNCWLDAAQLQHWQEQGQIDFALTLACGLRLRA
SAFAHTRGISLVLRLLPEQCPRLETLGAPPALSELLAEESGLLLVTGATGSGKSTTLAAMVGHLNQRLDGHILTLEDPVE
FIHHSERCLIQQREIGRHCPSFAAALRVALRQDPDVILLGELRDSETIRLALTAAETGHLVMATLHTRGAAPAVERLIDV
FPAEEKDQVRSQLAGSLCAVLAQKLLPARQGGRVALYELLVNTPAVANLIREGKVHQLPGIMQTGMQAGMLTFTQSFQQR
VAAGEL

Nucleotide


Download         Length: 981 bp        

>NTDB_id=31568 KPK_RS03520 WP_012540564.1 734788..735768(+) (pilT) [Klebsiella variicola]
ATGAAGCTGGAAGAAATCGTAGCCCTTAGTGTAAAGCATAATGTCTCCGATCTACACCTGTGCAATTCCGCCGCACCGCG
CTGGCGGCGGCAGGGCAAGCTGGAGCCCGCCCCGTTTCCCGCGCCGGATATCCCGGATTTACTCAACTGCTGGCTTGATG
CCGCACAGTTACAGCATTGGCAGGAACAGGGACAGATTGACTTTGCGCTGACCCTGGCCTGCGGTTTGCGGCTGCGCGCC
AGCGCTTTCGCCCATACGCGTGGAATATCGCTGGTGCTACGCCTTCTGCCTGAACAGTGCCCGCGTCTGGAGACGCTGGG
CGCCCCGCCTGCGCTGAGCGAGCTGCTGGCGGAAGAGAGTGGTTTGCTGTTGGTCACCGGAGCGACGGGCAGCGGCAAGT
CGACCACCCTGGCGGCGATGGTGGGGCATCTCAACCAGCGTCTTGATGGCCATATTCTGACCCTGGAGGACCCGGTGGAG
TTTATCCATCACAGCGAGCGCTGCCTGATCCAGCAGCGGGAGATTGGCCGTCATTGTCCTTCGTTCGCCGCGGCGCTCCG
CGTGGCGCTGCGCCAGGATCCGGATGTGATCCTGCTCGGGGAGCTACGCGACAGCGAAACCATTCGTCTGGCGTTAACGG
CTGCGGAGACCGGACATCTGGTAATGGCGACATTACATACCCGCGGCGCGGCGCCGGCGGTGGAGAGATTGATCGATGTC
TTTCCGGCAGAGGAGAAAGATCAGGTTCGTAGTCAGCTGGCCGGAAGCCTGTGCGCGGTGCTGGCGCAAAAATTGTTGCC
TGCACGTCAGGGCGGCAGAGTTGCGCTATACGAGCTTTTGGTCAATACCCCCGCAGTAGCTAACTTGATCCGTGAAGGAA
AAGTGCATCAGTTGCCCGGCATAATGCAGACCGGGATGCAGGCCGGAATGCTGACATTTACGCAGAGTTTTCAGCAACGT
GTCGCCGCAGGCGAACTATAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilT Vibrio cholerae strain A1552

51.682

100

0.518
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

51.682

100

0.518
  pilT Acinetobacter baylyi ADP1

48.012

100

0.482
  pilT Neisseria meningitidis 8013

47.561

100

0.479
  pilT Acinetobacter baumannii strain A118

47.706

100

0.479
  pilT Acinetobacter baumannii D1279779

47.706

100

0.479
  pilT Acinetobacter nosocomialis M2

47.401

100

0.475
  pilT Neisseria gonorrhoeae MS11

47.256

100

0.475
  pilT Legionella pneumophila strain ERS1305867

47.531

99.387

0.472
  pilT Legionella pneumophila strain Lp02

47.531

99.387

0.472
  pilT Pseudomonas stutzeri DSM 10701

46.789

100

0.469
  pilT Pseudomonas aeruginosa PAK

45.872

100

0.46
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

43.849

97.239

0.426
  pilU Vibrio cholerae strain A1552

40.122

100

0.405
  pilU Pseudomonas stutzeri DSM 10701

40

100

0.405
  pilU Acinetobacter baylyi ADP1

38.941

98.466

0.383

Multiple sequence alignment