Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | GBEM_RS00415 | Genome accession | NC_011146 |
| Coordinates | 102690..103763 (+) | Length | 357 a.a. |
| NCBI ID | WP_012528524.1 | Uniprot ID | B5E8D2 |
| Organism | Citrifermentans bemidjiense Bem | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 97690..108763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GBEM_RS00405 (Gbem_0082) | - | 99397..100401 (-) | 1005 | WP_012528522.1 | hypothetical protein | - |
| GBEM_RS00410 (Gbem_0083) | - | 101019..102677 (+) | 1659 | WP_012528523.1 | ATPase, T2SS/T4P/T4SS family | - |
| GBEM_RS00415 (Gbem_0084) | pilT | 102690..103763 (+) | 1074 | WP_012528524.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| GBEM_RS00420 (Gbem_0085) | - | 103767..104936 (+) | 1170 | WP_012528525.1 | aminotransferase | - |
| GBEM_RS00425 (Gbem_0086) | - | 105215..106054 (-) | 840 | WP_012528526.1 | alpha/beta fold hydrolase | - |
| GBEM_RS21115 | - | 106051..106290 (-) | 240 | WP_148212880.1 | hypothetical protein | - |
| GBEM_RS00430 (Gbem_0087) | - | 106490..106708 (+) | 219 | WP_012528527.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 39892.07 Da Isoelectric Point: 7.2881
>NTDB_id=31444 GBEM_RS00415 WP_012528524.1 102690..103763(+) (pilT) [Citrifermentans bemidjiense Bem]
MARIDALFKLLHEAGASDLHLSAGSPPIFRLRGEMERQNFKSLGHEELKALLYEILTPKQRETFEEKHDLDFAYSVPGLA
RFRGNFMMQHRGIAAVFRIIPTKILSADELGLPEGIRNLTKLRKGLVLVTGPTGSGKSTTLAAMIDLINITRREHILTLE
DPLEFIHENKMSLFNQRQIGEHSESFASALRAALREDPDVILVGEMRDLETIALAMSAAETGHLVFGTLHTSSAAKTVDR
IIDVFPKDGQEQVRAILSESLRGVVCQQLLKTADGKGRAAAQEIMVWNAAIGNLIREGKTFQIPSIMQTGRKDGMQLMDQ
HILDLLKTKKIAPEEAYRCCTDKRQFEQYLPNKPAEQ
MARIDALFKLLHEAGASDLHLSAGSPPIFRLRGEMERQNFKSLGHEELKALLYEILTPKQRETFEEKHDLDFAYSVPGLA
RFRGNFMMQHRGIAAVFRIIPTKILSADELGLPEGIRNLTKLRKGLVLVTGPTGSGKSTTLAAMIDLINITRREHILTLE
DPLEFIHENKMSLFNQRQIGEHSESFASALRAALREDPDVILVGEMRDLETIALAMSAAETGHLVFGTLHTSSAAKTVDR
IIDVFPKDGQEQVRAILSESLRGVVCQQLLKTADGKGRAAAQEIMVWNAAIGNLIREGKTFQIPSIMQTGRKDGMQLMDQ
HILDLLKTKKIAPEEAYRCCTDKRQFEQYLPNKPAEQ
Nucleotide
Download Length: 1074 bp
>NTDB_id=31444 GBEM_RS00415 WP_012528524.1 102690..103763(+) (pilT) [Citrifermentans bemidjiense Bem]
ATGGCAAGGATTGACGCACTGTTCAAGCTGTTGCACGAGGCCGGGGCCTCCGACCTGCACCTTTCCGCCGGATCCCCGCC
GATCTTCCGTTTGCGCGGCGAGATGGAGCGGCAGAACTTCAAGTCGCTCGGGCACGAGGAGCTGAAGGCGCTCCTTTACG
AGATCCTGACCCCGAAGCAGCGCGAGACCTTCGAGGAGAAGCACGACCTCGACTTCGCCTACTCGGTACCGGGCCTGGCG
CGCTTCCGCGGCAACTTCATGATGCAGCACCGTGGGATCGCGGCGGTGTTCCGCATCATTCCGACCAAGATACTTTCTGC
CGACGAGCTGGGGCTTCCGGAAGGGATCCGCAATCTGACCAAGCTCAGGAAGGGGCTGGTGCTGGTCACCGGTCCCACGG
GGAGCGGCAAGTCCACGACGCTCGCCGCCATGATAGACCTGATCAACATCACCAGGAGGGAGCACATCCTGACGCTGGAG
GACCCGCTGGAGTTCATCCACGAAAACAAGATGTCCCTTTTCAACCAGCGCCAGATTGGCGAGCACTCCGAGAGCTTCGC
CAGCGCGCTGAGGGCGGCGCTAAGGGAAGACCCGGACGTGATCCTGGTGGGCGAGATGCGGGACCTCGAGACCATCGCCC
TCGCCATGAGCGCCGCTGAGACGGGGCACCTGGTGTTCGGCACCCTGCACACCAGTTCCGCCGCGAAGACCGTGGACAGG
ATCATCGACGTCTTCCCCAAGGACGGGCAGGAGCAGGTGCGCGCCATCCTTTCTGAGTCGCTCCGGGGGGTGGTCTGCCA
GCAGCTGTTGAAGACCGCCGACGGCAAGGGGAGGGCGGCCGCGCAGGAGATCATGGTCTGGAACGCCGCCATCGGGAACC
TGATCCGGGAAGGTAAGACCTTCCAGATCCCCTCCATCATGCAGACCGGCAGAAAGGATGGGATGCAGCTCATGGACCAG
CACATCCTCGACCTGTTGAAGACCAAGAAAATCGCACCCGAGGAGGCGTACCGCTGCTGCACTGACAAGAGGCAGTTCGA
GCAGTACCTCCCGAACAAGCCGGCGGAGCAGTAG
ATGGCAAGGATTGACGCACTGTTCAAGCTGTTGCACGAGGCCGGGGCCTCCGACCTGCACCTTTCCGCCGGATCCCCGCC
GATCTTCCGTTTGCGCGGCGAGATGGAGCGGCAGAACTTCAAGTCGCTCGGGCACGAGGAGCTGAAGGCGCTCCTTTACG
AGATCCTGACCCCGAAGCAGCGCGAGACCTTCGAGGAGAAGCACGACCTCGACTTCGCCTACTCGGTACCGGGCCTGGCG
CGCTTCCGCGGCAACTTCATGATGCAGCACCGTGGGATCGCGGCGGTGTTCCGCATCATTCCGACCAAGATACTTTCTGC
CGACGAGCTGGGGCTTCCGGAAGGGATCCGCAATCTGACCAAGCTCAGGAAGGGGCTGGTGCTGGTCACCGGTCCCACGG
GGAGCGGCAAGTCCACGACGCTCGCCGCCATGATAGACCTGATCAACATCACCAGGAGGGAGCACATCCTGACGCTGGAG
GACCCGCTGGAGTTCATCCACGAAAACAAGATGTCCCTTTTCAACCAGCGCCAGATTGGCGAGCACTCCGAGAGCTTCGC
CAGCGCGCTGAGGGCGGCGCTAAGGGAAGACCCGGACGTGATCCTGGTGGGCGAGATGCGGGACCTCGAGACCATCGCCC
TCGCCATGAGCGCCGCTGAGACGGGGCACCTGGTGTTCGGCACCCTGCACACCAGTTCCGCCGCGAAGACCGTGGACAGG
ATCATCGACGTCTTCCCCAAGGACGGGCAGGAGCAGGTGCGCGCCATCCTTTCTGAGTCGCTCCGGGGGGTGGTCTGCCA
GCAGCTGTTGAAGACCGCCGACGGCAAGGGGAGGGCGGCCGCGCAGGAGATCATGGTCTGGAACGCCGCCATCGGGAACC
TGATCCGGGAAGGTAAGACCTTCCAGATCCCCTCCATCATGCAGACCGGCAGAAAGGATGGGATGCAGCTCATGGACCAG
CACATCCTCGACCTGTTGAAGACCAAGAAAATCGCACCCGAGGAGGCGTACCGCTGCTGCACTGACAAGAGGCAGTTCGA
GCAGTACCTCCCGAACAAGCCGGCGGAGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter nosocomialis M2 |
55.357 |
94.118 |
0.521 |
| pilT | Acinetobacter baumannii D1279779 |
55.357 |
94.118 |
0.521 |
| pilT | Acinetobacter baumannii strain A118 |
55.357 |
94.118 |
0.521 |
| pilT | Acinetobacter baylyi ADP1 |
59.164 |
87.115 |
0.515 |
| pilT | Pseudomonas stutzeri DSM 10701 |
55.255 |
93.277 |
0.515 |
| pilT | Pseudomonas aeruginosa PAK |
55.255 |
93.277 |
0.515 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.683 |
92.717 |
0.507 |
| pilT | Legionella pneumophila strain Lp02 |
54.683 |
92.717 |
0.507 |
| pilT | Neisseria meningitidis 8013 |
56.037 |
90.476 |
0.507 |
| pilT | Neisseria gonorrhoeae MS11 |
55.728 |
90.476 |
0.504 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
53.963 |
91.877 |
0.496 |
| pilT | Vibrio cholerae strain A1552 |
53.963 |
91.877 |
0.496 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.729 |
96.078 |
0.487 |
| pilU | Vibrio cholerae strain A1552 |
39.349 |
94.678 |
0.373 |
| pilU | Pseudomonas stutzeri DSM 10701 |
39.458 |
92.997 |
0.367 |
| pilU | Acinetobacter baylyi ADP1 |
38.739 |
93.277 |
0.361 |