Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | DU509_RS05025 | Genome accession | NZ_CP031115 |
| Coordinates | 997181..998323 (-) | Length | 380 a.a. |
| NCBI ID | WP_119067199.1 | Uniprot ID | - |
| Organism | Rubrobacter indicoceani strain SCSIO 08198 | ||
| Function | mediate the depolymerization of the type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 992181..1003323
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DU509_RS05010 | - | 992497..994884 (-) | 2388 | WP_119067192.1 | transketolase-like TK C-terminal-containing protein | - |
| DU509_RS05015 | - | 995124..995771 (-) | 648 | WP_162924455.1 | hypothetical protein | - |
| DU509_RS05020 | - | 995973..997184 (-) | 1212 | WP_119067197.1 | type II secretion system F family protein | - |
| DU509_RS05025 | pilT | 997181..998323 (-) | 1143 | WP_119067199.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| DU509_RS05030 | - | 998351..1000105 (-) | 1755 | WP_119067201.1 | GspE/PulE family protein | - |
| DU509_RS05035 | - | 1000338..1001549 (+) | 1212 | WP_240432576.1 | type IV pilus twitching motility protein PilT | - |
| DU509_RS05040 | - | 1001562..1002296 (-) | 735 | WP_162924456.1 | lipoate--protein ligase family protein | - |
Sequence
Protein
Download Length: 380 a.a. Molecular weight: 41537.34 Da Isoelectric Point: 7.6539
>NTDB_id=303461 DU509_RS05025 WP_119067199.1 997181..998323(-) (pilT) [Rubrobacter indicoceani strain SCSIO 08198]
MTENGLNDYLFAAHRLEASDLHLTVGAPPSVRVSGRVRPLLSEGGAPCPPVSPSHARDVIYGILTDRQRKRLEEDLELDF
SYTVANLSRFRVNVYVQRGSLGAAFRMIPHSITPLEDLGLPKVVADLADRPRGLVLVTGPTGSGKSTTLAAMIDRINEVR
EEHIMSVEDPIEFLHFHKKCLVNQREVGQDTRSFANALKHVLRQDPDVILVGEMRDLETIQLAITAAETGHMVFATLHTQ
DAPQTVDRVIDVFPPHQQQQVRTQLSNALEGVVTQTLVQRREERGGGRVVAAEVMVATSGVRNLIREGKNHQIYSAMQTG
AGVGMVTMDASLVDLVRRGEISKESALKKSSNPEEVHRMLGAGPPSARGGSRNGLVGGRR
MTENGLNDYLFAAHRLEASDLHLTVGAPPSVRVSGRVRPLLSEGGAPCPPVSPSHARDVIYGILTDRQRKRLEEDLELDF
SYTVANLSRFRVNVYVQRGSLGAAFRMIPHSITPLEDLGLPKVVADLADRPRGLVLVTGPTGSGKSTTLAAMIDRINEVR
EEHIMSVEDPIEFLHFHKKCLVNQREVGQDTRSFANALKHVLRQDPDVILVGEMRDLETIQLAITAAETGHMVFATLHTQ
DAPQTVDRVIDVFPPHQQQQVRTQLSNALEGVVTQTLVQRREERGGGRVVAAEVMVATSGVRNLIREGKNHQIYSAMQTG
AGVGMVTMDASLVDLVRRGEISKESALKKSSNPEEVHRMLGAGPPSARGGSRNGLVGGRR
Nucleotide
Download Length: 1143 bp
>NTDB_id=303461 DU509_RS05025 WP_119067199.1 997181..998323(-) (pilT) [Rubrobacter indicoceani strain SCSIO 08198]
ATGACAGAGAACGGCCTCAACGACTACCTCTTCGCTGCCCACCGGCTCGAGGCGAGCGACCTGCACCTGACGGTGGGGGC
TCCGCCGTCGGTGAGGGTCTCCGGGCGGGTCCGGCCCCTGCTTTCTGAGGGCGGCGCCCCCTGCCCGCCCGTCTCCCCCT
CTCACGCAAGGGATGTGATCTACGGCATCCTCACCGACCGCCAGCGCAAGCGCCTGGAGGAGGACCTCGAGCTTGACTTC
TCCTACACCGTCGCAAACCTCTCGCGTTTTCGGGTGAACGTGTACGTGCAGAGGGGCTCTCTCGGGGCGGCTTTTCGGAT
GATCCCGCACAGCATCACCCCCCTAGAGGACCTCGGCCTGCCGAAGGTGGTCGCAGACCTTGCAGACCGCCCCCGGGGCC
TTGTCCTTGTCACGGGCCCTACGGGGAGCGGCAAGTCAACGACCCTCGCTGCGATGATAGACCGCATAAACGAGGTGCGT
GAAGAGCACATAATGAGCGTGGAGGACCCGATAGAGTTTCTTCACTTCCACAAGAAGTGCCTTGTAAACCAGCGCGAGGT
GGGCCAGGATACCCGCTCCTTTGCAAACGCCCTGAAGCACGTCCTGAGGCAGGACCCGGACGTGATCCTTGTAGGCGAGA
TGCGAGACCTCGAGACCATACAGCTTGCCATCACCGCCGCCGAGACCGGGCACATGGTCTTTGCAACGCTTCACACCCAG
GACGCCCCGCAGACGGTAGACCGGGTGATAGACGTCTTTCCGCCCCACCAGCAGCAGCAGGTAAGGACGCAGCTCTCAAA
CGCTCTTGAGGGGGTAGTAACGCAGACGCTGGTGCAAAGAAGAGAGGAGAGAGGCGGCGGGCGGGTGGTAGCGGCGGAGG
TGATGGTCGCAACAAGCGGGGTAAGGAACCTTATAAGGGAGGGGAAGAACCACCAGATCTACTCCGCGATGCAGACCGGA
GCCGGGGTGGGGATGGTGACGATGGACGCGAGCCTGGTGGACCTTGTGAGGCGGGGTGAGATCTCAAAGGAGAGCGCCCT
GAAGAAGTCCTCGAACCCCGAAGAGGTGCACAGGATGCTCGGTGCCGGGCCCCCGTCCGCGCGGGGCGGGTCTCGTAACG
GGCTGGTCGGGGGTCGCAGATGA
ATGACAGAGAACGGCCTCAACGACTACCTCTTCGCTGCCCACCGGCTCGAGGCGAGCGACCTGCACCTGACGGTGGGGGC
TCCGCCGTCGGTGAGGGTCTCCGGGCGGGTCCGGCCCCTGCTTTCTGAGGGCGGCGCCCCCTGCCCGCCCGTCTCCCCCT
CTCACGCAAGGGATGTGATCTACGGCATCCTCACCGACCGCCAGCGCAAGCGCCTGGAGGAGGACCTCGAGCTTGACTTC
TCCTACACCGTCGCAAACCTCTCGCGTTTTCGGGTGAACGTGTACGTGCAGAGGGGCTCTCTCGGGGCGGCTTTTCGGAT
GATCCCGCACAGCATCACCCCCCTAGAGGACCTCGGCCTGCCGAAGGTGGTCGCAGACCTTGCAGACCGCCCCCGGGGCC
TTGTCCTTGTCACGGGCCCTACGGGGAGCGGCAAGTCAACGACCCTCGCTGCGATGATAGACCGCATAAACGAGGTGCGT
GAAGAGCACATAATGAGCGTGGAGGACCCGATAGAGTTTCTTCACTTCCACAAGAAGTGCCTTGTAAACCAGCGCGAGGT
GGGCCAGGATACCCGCTCCTTTGCAAACGCCCTGAAGCACGTCCTGAGGCAGGACCCGGACGTGATCCTTGTAGGCGAGA
TGCGAGACCTCGAGACCATACAGCTTGCCATCACCGCCGCCGAGACCGGGCACATGGTCTTTGCAACGCTTCACACCCAG
GACGCCCCGCAGACGGTAGACCGGGTGATAGACGTCTTTCCGCCCCACCAGCAGCAGCAGGTAAGGACGCAGCTCTCAAA
CGCTCTTGAGGGGGTAGTAACGCAGACGCTGGTGCAAAGAAGAGAGGAGAGAGGCGGCGGGCGGGTGGTAGCGGCGGAGG
TGATGGTCGCAACAAGCGGGGTAAGGAACCTTATAAGGGAGGGGAAGAACCACCAGATCTACTCCGCGATGCAGACCGGA
GCCGGGGTGGGGATGGTGACGATGGACGCGAGCCTGGTGGACCTTGTGAGGCGGGGTGAGATCTCAAAGGAGAGCGCCCT
GAAGAAGTCCTCGAACCCCGAAGAGGTGCACAGGATGCTCGGTGCCGGGCCCCCGTCCGCGCGGGGCGGGTCTCGTAACG
GGCTGGTCGGGGGTCGCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Acinetobacter baylyi ADP1 |
56.083 |
88.684 |
0.497 |
| pilT | Acinetobacter nosocomialis M2 |
55.49 |
88.684 |
0.492 |
| pilT | Acinetobacter baumannii D1279779 |
55.49 |
88.684 |
0.492 |
| pilT | Acinetobacter baumannii strain A118 |
55.49 |
88.684 |
0.492 |
| pilT | Legionella pneumophila strain Lp02 |
54.734 |
88.947 |
0.487 |
| pilT | Legionella pneumophila strain ERS1305867 |
54.734 |
88.947 |
0.487 |
| pilT | Pseudomonas aeruginosa PAK |
54.599 |
88.684 |
0.484 |
| pilT | Pseudomonas stutzeri DSM 10701 |
54.006 |
88.684 |
0.479 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
51.412 |
93.158 |
0.479 |
| pilT | Neisseria meningitidis 8013 |
50.284 |
92.632 |
0.466 |
| pilT | Neisseria gonorrhoeae MS11 |
49.858 |
92.368 |
0.461 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
51.807 |
87.368 |
0.453 |
| pilT | Vibrio cholerae strain A1552 |
51.807 |
87.368 |
0.453 |
| pilU | Pseudomonas stutzeri DSM 10701 |
42.899 |
90.789 |
0.389 |
| pilU | Vibrio cholerae strain A1552 |
41.69 |
93.421 |
0.389 |