Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SWOO_RS02115 Genome accession   NC_010506
Coordinates   505100..506623 (-) Length   507 a.a.
NCBI ID   WP_012323058.1    Uniprot ID   B1KPD9
Organism   Shewanella woodyi ATCC 51908     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 500100..511623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SWOO_RS02090 (Swoo_0405) - 500325..500951 (-) 627 WP_012323053.1 outer membrane beta-barrel protein -
  SWOO_RS02095 (Swoo_0406) - 501352..502440 (+) 1089 WP_012323054.1 branched-chain amino acid aminotransferase -
  SWOO_RS25735 (Swoo_0407) - 502518..502958 (-) 441 WP_012323055.1 hypothetical protein -
  SWOO_RS02105 (Swoo_0408) - 503146..504069 (-) 924 WP_012323056.1 acyltransferase -
  SWOO_RS02110 (Swoo_0409) - 504077..504982 (-) 906 WP_012323057.1 acyltransferase -
  SWOO_RS02115 (Swoo_0410) comM 505100..506623 (-) 1524 WP_012323058.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SWOO_RS02120 (Swoo_0411) - 507312..508232 (-) 921 WP_012323059.1 hypothetical protein -
  SWOO_RS02125 (Swoo_0412) - 508245..508931 (-) 687 WP_041417464.1 hypothetical protein -
  SWOO_RS26490 - 509198..509329 (-) 132 WP_407636065.1 hypothetical protein -
  SWOO_RS02135 (Swoo_0414) - 509886..511583 (+) 1698 WP_012323061.1 P-loop NTPase fold protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55676.71 Da        Isoelectric Point: 8.4773

>NTDB_id=30306 SWOO_RS02115 WP_012323058.1 505100..506623(-) (comM) [Shewanella woodyi ATCC 51908]
MAIACVATRASKGVDAPSVTVEVHLSNGLPAFNLVGLPETSVKEAKERVRSAIINAGFEFPMRRITVNLAPADLPKQGGR
YDLPIAIGILVASKQIPEKAIKDHEFVGELALSGHIRQSQGLLPVIVEARQQGINLVLPLENRADAELVGYNRVYFASHL
QGLSEYLHGQSRLPGIESGLEWIEHEKEESQSCFSEVIGQYHAKHGLEIAAAGNHNILLLGPPGTGKSMLASRMMQLLPP
LGYDEALEVATLHSVAGHQIHPNAFYTRPFRNPHHTSSAISLVGGGSVPRPGEISLAHRGVLFLDEVVEFPRKVLDCLRE
PMETGEVVISRAAAKLTFSSRFQLIAAMNPSPCGDLDNARATPDQIQRYLSRLSGPFLDRFDLTIEVPRLPAGALTQENK
NAETSSTIAQRVKLARERQLNRAGVLNSELSGKQLKDLGRFKQADLLFLEQSVNKLNLSIRSFHRLQRVSRTIADLQQSE
NVERNHIAQALGYRAMDRLLNSLKTSY

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=30306 SWOO_RS02115 WP_012323058.1 505100..506623(-) (comM) [Shewanella woodyi ATCC 51908]
ATGGCCATCGCTTGTGTCGCCACCCGTGCCAGCAAAGGCGTGGACGCTCCCTCCGTCACCGTTGAGGTTCACCTGAGTAA
CGGCCTTCCAGCATTCAATCTAGTAGGTTTGCCTGAAACCTCTGTCAAAGAGGCCAAAGAGCGGGTGCGCAGCGCCATTA
TTAATGCTGGCTTTGAGTTTCCCATGCGCAGGATCACAGTCAACCTTGCCCCAGCCGATCTTCCTAAGCAGGGAGGTCGC
TATGATCTTCCGATAGCCATCGGGATCTTGGTCGCTTCGAAGCAGATCCCTGAAAAAGCAATTAAGGATCATGAATTCGT
CGGAGAGCTTGCCCTCTCTGGACACATAAGACAAAGCCAGGGCTTACTGCCTGTTATTGTCGAGGCGCGTCAGCAAGGGA
TCAACTTAGTGCTACCACTAGAAAACCGAGCCGATGCTGAACTTGTGGGTTATAACAGGGTATATTTTGCCTCCCACCTG
CAAGGATTAAGCGAATATCTTCATGGTCAGTCTCGACTCCCTGGTATCGAATCAGGGCTTGAATGGATTGAACATGAGAA
AGAGGAGAGTCAGAGCTGTTTTAGCGAGGTGATTGGTCAATACCATGCAAAACATGGGTTAGAGATAGCCGCAGCTGGCA
ACCATAACATTCTGCTACTTGGCCCACCAGGTACAGGGAAGAGTATGCTTGCCAGCCGTATGATGCAACTGTTACCCCCT
CTTGGCTATGATGAAGCCTTGGAGGTCGCAACACTGCACTCTGTTGCCGGACATCAGATCCACCCTAATGCGTTTTACAC
CCGCCCCTTTCGAAACCCACACCATACCAGCTCAGCCATCTCACTCGTGGGTGGAGGCAGCGTTCCTAGGCCTGGCGAGA
TCTCATTAGCCCACCGAGGGGTGCTCTTCCTAGACGAAGTGGTTGAGTTCCCGCGCAAGGTGCTCGATTGTTTGCGAGAA
CCTATGGAGACTGGTGAGGTAGTGATCTCCCGTGCAGCCGCTAAACTTACTTTTTCCAGCCGCTTCCAGCTAATCGCCGC
CATGAATCCCAGCCCTTGTGGCGACTTGGATAATGCCAGAGCGACACCAGATCAGATCCAGAGATATTTATCTCGCTTAT
CTGGCCCCTTTCTCGATAGGTTTGATCTCACCATTGAGGTTCCCAGACTTCCTGCTGGCGCCCTCACCCAAGAGAACAAG
AATGCAGAGACCAGTTCAACCATTGCACAAAGAGTAAAACTTGCTAGAGAGCGACAACTCAACCGAGCAGGGGTGCTCAA
TAGTGAATTAAGCGGTAAACAGCTCAAAGATCTGGGAAGATTTAAGCAAGCAGATCTACTTTTTTTAGAGCAAAGTGTGA
ATAAATTAAACCTATCGATACGCAGCTTTCATCGACTTCAGCGGGTATCTCGCACCATTGCAGATCTGCAACAAAGTGAA
AACGTAGAGCGAAATCATATCGCCCAGGCATTGGGTTATCGGGCTATGGATAGATTGTTAAATAGTCTTAAAACTAGCTA
TTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B1KPD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.043

100

0.54
  comM Vibrio campbellii strain DS40M4

52.86

100

0.529
  comM Haemophilus influenzae Rd KW20

52.964

99.803

0.529
  comM Glaesserella parasuis strain SC1401

51.677

100

0.517
  comM Legionella pneumophila str. Paris

47.495

98.422

0.467
  comM Legionella pneumophila strain ERS1305867

47.495

98.422

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.687

98.422

0.43

Multiple sequence alignment